Marcel Ramos

According to our database, Marcel Ramos authored at least 11 papers between 2016 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2025

Eleven quick tips for writing a Bioconductor package.

Charlotte Soneson, Lori A. Shepherd, Marcel Ramos, Kevin C. Rue-Albrecht, Johannes Rainer, Hervé Pagès, Vincent J. Carey

PLoS Comput. Biol., 2025

Learning and teaching biological data science in the Bioconductor community.

Jenny Drnevich, Frederick J. Tan, Fabricio Almeida-Silva, Robert Castelo, Aedín C. Culhane, Sean R. Davis, Maria A. Doyle, Ludwig Geistlinger, Andrew R. Ghazi, Susan P. Holmes, Leo Lahti, Alexandru Mahmoud, Kozo Nishida, Marcel Ramos, Kevin C. Rue-Albrecht, David J. H. Shih, Laurent Gatto, Charlotte Soneson

PLoS Comput. Biol., 2025

2024

Learning and teaching biological data science in the Bioconductor community.

Jenny Drnevich, Frederick J. Tan, Fabricio Almeida-Silva, Robert Castelo, Aedín C. Culhane, Sean Davis, Maria A. Doyle, Susan P. Holmes, Leo Lahti, Alexandru Mahmoud, Kozo Nishida, Marcel Ramos, Kevin C. Rue-Albrecht, David J. H. Shih, Laurent Gatto, Charlotte Soneson

CoRR, 2024

<i>lefser</i>: implementation of metagenomic biomarker discovery tool, <i>LEfSe</i>, in R.

Asya Khleborodova, Samuel David Gamboa-Tuz, Marcel Ramos, Nicola Segata, Levi Waldron, Sehyun Oh

Bioinform., 2024

2023

Curated single cell multimodal landmark datasets for R/Bioconductor.

Kelly B. Eckenrode, Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger, Aedín C. Culhane, Laurent Gatto, Vincent J. Carey, Martin Morgan, Davide Risso, Levi Waldron

PLoS Comput. Biol., 2023

RaggedExperiment: the missing link between genomic ranges and matrices in Bioconductor.

Marcel Ramos, Martin Morgan, Ludwig Geistlinger, Vincent J. Carey, Levi Waldron

Bioinform., 2023

2021

Toward a gold standard for benchmarking gene set enrichment analysis.

Ludwig Geistlinger, Gergely Csaba, Mara Santarelli, Marcel Ramos, Lucas Schiffer, Nitesh Turaga, Charity W. Law, Sean Davis, Vincent J. Carey, Martin Morgan, Ralf Zimmer, Levi Waldron

Briefings Bioinform., 2021

2020

CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes.

Vinícius da Silva, Marcel Ramos, Martien Groenen, Richard Crooijmans, Anna Johansson, Luciana C. A. Regitano, Luiz Coutinho, Ralf Zimmer, Levi Waldron, Ludwig Geistlinger

Bioinform., 2020

2018

Orchestrating a community-developed computational workshop and accompanying training materials.

Sean Davis, Marcel Ramos, Lori A. Shepherd, Nitesh Turaga, Ludwig Geistlinger, Martin T. Morgan, Benjamin Haibe-Kains, Levi Waldron

F1000Research, 2018

2017

ogttMetrics: Data structures and algorithms for oral glucose tolerance tests.

Benjamin J. Stubbs, Keith Frankston, Marcel Ramos, Nancy Laranjo, Frank M. Sacks, Vincent J. Carey

F1000Research, 2017

2016

Public data and open source tools for multi-assay genomic investigation of disease.

Lavanya Kannan, Marcel Ramos, Angela Re, Nehme Hachem, Zhaleh Safikhani, Deena M. A. Gendoo, Sean Davis, David Gomez-Cabrero, Robert Castelo, Kasper D. Hansen, Vincent J. Carey, Martin Morgan, Aedín C. Culhane, Benjamin Haibe-Kains, Levi Waldron

Briefings Bioinform., 2016