Marcelo M. Brigido

According to our database, Marcelo M. Brigido authored at least 25 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

transcAnalysis: A Snakemake Pipeline for Differential Expression and Post-transcriptional Modification Analysis.

Pedro H. A. Barros, Waldeyr M. C. Silva, Marcelo M. Brigido

Proceedings of the Advances in Bioinformatics and Computational Biology, 2023

2020

Computational Simulations for Cyclizations Catalyzed by Plant Monoterpene Synthases.

Waldeyr Mendes Cordeiro da Silva, Daniela P. de Andrade, Jakob L. Andersen, Maria Emília Telles Walter, Marcelo M. Brigido, Peter F. Stadler, Christoph Flamm

Proceedings of the Advances in Bioinformatics and Computational Biology, 2020

Anti-CD3 Stimulated T Cell Transcriptome Reveals Novel ncRNAs and Correlates with a Suppressive Profile.

Manuela M. do Almo, Isabel G. Sousa, Waldeyr Mendes Cordeiro da Silva, Thomas Gatter, Peter F. Stadler, Steve Hoffmann, Andrea Queiroz Maranhão, Marcelo M. Brigido

Proceedings of the Advances in Bioinformatics and Computational Biology, 2020

2019

Venom Gland Peptides of Arthropods from the Brazilian Cerrado Biome Unveiled by Transcriptome Analysis.

Giovanni M. Guidini, Waldeyr M. C. Silva, Thalita S. Camargos, Caroline F. B. Mourão, Priscilla Galante, Tainá Raiol, Marcelo de Macedo Brígido, Maria Emília M. T. Walter, Elisabeth N. F. Schwartz

Proceedings of the Advances in Bioinformatics and Computational Biology, 2019

2018

Live neighbor-joining.

Guilherme P. Telles, Graziela S. Araújo, Maria Emília Telles Walter, Marcelo M. Brigido, Nalvo F. Almeida

BMC Bioinform., 2018

Human-Computer Interaction Communicability Evaluation Method Applied to Bioinformatics.

Gabriella Esteves, Waldeyr Mendes Cordeiro da Silva, Maria Emília Telles Walter, Marcelo M. Brigido, Fernanda Lima

Proceedings of the Trends and Advances in Information Systems and Technologies, 2018

Graph Databases in Molecular Biology.

Waldeyr Mendes Cordeiro da Silva, Polyane Wercelens, Maria Emília M. T. Walter, Maristela Holanda, Marcelo M. Brigido

Proceedings of the Advances in Bioinformatics and Computational Biology, 2018

S^2FS : Single Score Feature Selection Applied to the Problem of Distinguishing Long Non-coding RNAs from Protein Coding Transcripts.

Bruno C. Kümmel, André C. P. L. F. de Carvalho, Marcelo M. Brigido, Célia Ghedini Ralha, Maria Emília M. T. Walter

Proceedings of the Advances in Bioinformatics and Computational Biology, 2018

2017

A terpenoid metabolic network modelled as graph database.

Waldeyr Mendes Cordeiro da Silva, Danilo Vilar, Daniel S. Souza, Maria Emília Telles Walter, Maristela Terto de Holanda, Marcelo de Macedo Brígido

Int. J. Data Min. Bioinform., 2017

2016

2Path: A terpenoid metabolic network modeled as graph database.

Waldeyr Mendes Cordeiro da Silva, Danilo Vilar, Daniel S. Souza, Maria Emília Telles Walter, Marcelo M. Brigido, Maristela Holanda

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015

Knowledge-based reasoning to annotate noncoding RNA using multi-agent system.

Wosley Arruda, Daniel S. Souza, Célia Ghedini Ralha, Maria Emília M. T. Walter, Tainá Raiol, Marcelo M. Brigido, Peter F. Stadler

J. Bioinform. Comput. Biol., 2015

2014

Genome-Wide Identification of Non-coding RNAs in Komagatella pastoris str. GS115.

Hugo W. Schneider, Sebastian Bartschat, Gero Doose, Lucas Maciel, Erick Pizani, Marcelo Bassani, Fernando Araripe Torres, Sebastian Will, Tainá Raiol, Marcelo M. Brigido, Maria Emília Telles Walter, Peter F. Stadler

Proceedings of the Advances in Bioinformatics and Computational Biology, 2014

2013

A Pipeline to Characterize Virulence Factors in Mycobacterium Massiliense Genome.

Guilherme Menegói, Tainá Raiol, João Victor de Araújo Oliveira, Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo, Andrea Queiroz Maranhão, Ildinete Silva-Pereira, Anamélia Lorenzetti Bocca, Ana Paula Junqueira-Kipnis, Maria Emília M. T. Walter, André Kipnis, Marcelo de Macedo Brígido

Proceedings of the Advances in Bioinformatics and Computational Biology, 2013

ncRNA-Agents: A Multiagent System for Non-coding RNA Annotation.

Wosley Arruda, Célia Ghedini Ralha, Tainá Raiol, Marcelo M. Brigido, Maria Emília M. T. Walter, Peter F. Stadler

Proceedings of the Advances in Bioinformatics and Computational Biology, 2013

2012

A Bioconductor Based Workflow for Z-DNA Region Detection and Biological Inference.

Halian Vilela, Tainá Raiol, Andrea Queiroz Maranhão, Maria Emília Telles Walter, Marcelo M. Brigido

Proceedings of the Advances in Bioinformatics and Computational Biology, 2012

2011

kGC: Finding Groups of Homologous Genes across Multiple Genomes.

Guilherme P. Telles, Nalvo F. Almeida, Marcelo M. Brigido, Paulo Antonio Alvarez, Maria Emília Telles Walter

Proceedings of the Advances in Bioinformatics and Computational Biology, 2011

Regene: Automatic Construction of a Multiple Component Dirichlet Mixture Priors Covariance Model to Identify Non-coding RNA.

Felipe Lessa, Daniele Martins Neto, Kátia Guimarães, Marcelo M. Brigido, Maria Emília Telles Walter

Proceedings of the Bioinformatics Research and Applications - 7th International Symposium, 2011

A Multi-agent Tool to Annotate Biological Sequences.

Célia Ghedini Ralha, Hugo W. Schneider, Maria Emília M. T. Walter, Marcelo M. Brigido

Proceedings of the ICAART 2011 - Proceedings of the 3rd International Conference on Agents and Artificial Intelligence, Volume 2, 2011

2009

Screening non-coding RNAs in transcriptomes from neglected species using PORTRAIT: case study of the pathogenic fungus Paracoccidioides brasiliensis.

Roberto T. Arrial, Roberto C. Togawa, Marcelo M. Brigido

BMC Bioinform., 2009

SOM-PORTRAIT: Identifying Non-coding RNAs Using Self-Organizing Maps.

Tulio C. Silva, Pedro A. Berger, Roberto T. Arrial, Roberto C. Togawa, Marcelo M. Brigido, Maria Emília M. T. Walter

Proceedings of the Advances in Bioinformatics and Computational Biology, 2009

2008

Using BioAgentsfor Supporting Manual Annotation on Genome Sequencing Projects.

Célia Ghedini Ralha, Hugo W. Schneider, Lucas O. da Fonseca, Maria Emília M. T. Walter, Marcelo M. Brigido

Proceedings of the Advances in Bioinformatics and Computational Biology, 2008

2007

Outlining a Strategy for Screening Non-coding RNAs on a Transcriptome Through Support Vector Machines.

Roberto T. Arrial, Roberto C. Togawa, Marcelo M. Brigido

Proceedings of the Advances in Bioinformatics and Computational Biology, 2007

A Method for Inferring Biological Functions Using Homologous Genes Among Three Genomes.

Daniel A. S. Anjos, Gustavo G. Zerlotini, Guilherme A. Pinto, Maria Emília Telles Walter, Marcelo M. Brigido, Guilherme P. Telles, Carlos Juliano M. Viana, Nalvo F. Almeida

Proceedings of the Advances in Bioinformatics and Computational Biology, 2007

2005

A Method for Comparing Three Genomes.

Guilherme P. Telles, Marcelo M. Brigido, Nalvo F. Almeida, Carlos Juliano M. Viana, Daniel A. S. Anjos, Maria Emília Telles Walter

Proceedings of the Advances in Bioinformatics and Computational Biology, 2005

2004

A program to visualize multiple alignments.

Daniel A. S. Anjos, Rodrigo Coimbra, Shana Santos, Maria Jose Carvalho, Marcelo M. Brigido, Maria Emília Telles Walter

Proceedings of the III Brazilian Workshop on Bioinformatics, 2004