Alba Cristina Magalhaes Alves de Melo

According to our database1, Alba Cristina Magalhaes Alves de Melo authored at least 110 papers between 1997 and 2020.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2020
Bitmap filter: Speeding up exact set similarity joins with bitwise operations.
Inf. Syst., 2020

Optimizing parameter sensitivity analysis of large-scale microscopy image analysis workflows with multilevel computation reuse.
Concurrency and Computation: Practice and Experience, 2020

2019
Trends on heterogeneous and innovative hardware and software systems.
J. Parallel Distributed Comput., 2019

Multi-objective Parameter Auto-tuning for Tissue Image Segmentation Workflows.
J. Digital Imaging, 2019

Using Multiple Fickett Bands to Accelerate Biological Sequence Comparisons.
Journal of Computational Biology, 2019

Multiagent system for dynamic resource provisioning in cloud computing platforms.
Future Gener. Comput. Syst., 2019

Run-time Parameter Sensitivity Analysis Optimizations.
CoRR, 2019

Statistical analysis of Amazon EC2 cloud pricing models.
Concurrency and Computation: Practice and Experience, 2019

MASA-OpenCL: Parallel pruned comparison of long DNA sequences with OpenCL.
Concurrency and Computation: Practice and Experience, 2019

Sensitivity analysis in digital pathology: Handling large number of parameters with compute expensive workflows.
Comp. in Bio. and Med., 2019

Introduction to HiCOMB 2019.
Proceedings of the IEEE International Parallel and Distributed Processing Symposium Workshops, 2019

APDCM 2019 Keynote Talk.
Proceedings of the IEEE International Parallel and Distributed Processing Symposium Workshops, 2019

Utility-Based Strategy for Balanced Cost and Availability at the Cloud Spot Market.
Proceedings of the 12th IEEE International Conference on Cloud Computing, 2019

2018
PA-Star: A disk-assisted parallel A-Star strategy with locality-sensitive hash for multiple sequence alignment.
J. Parallel Distributed Comput., 2018

Tuning for Tissue Image Segmentation Workflows for Accuracy and Performance.
CoRR, 2018

Cooperative and out-of-core execution of the irregular wavefront propagation pattern on hybrid machines with Intel® Xeon Phi™.
Concurrency and Computation: Practice and Experience, 2018

Formalization of Block Pruning: Reducing the Number of Cells Computed in Exact Biological Sequence Comparison Algorithms.
Comput. J., 2018

DNA sequences alignment in multi-GPUs: acceleration and energy payoff.
BMC Bioinformatics, 2018

2017
Dohko: an autonomic system for provision, configuration, and management of inter-cloud environments based on a software product line engineering method.
Cluster Computing, 2017

Algorithm sensitivity analysis and parameter tuning for tissue image segmentation pipelines.
Bioinformatics, 2017

CUDA-Sankoff: Using GPU to Accelerate the Pairwise Structural RNA Alignment.
Proceedings of the 25th Euromicro International Conference on Parallel, 2017

Smith-Waterman Acceleration in Multi-GPUs: A Performance per Watt Analysis.
Proceedings of the Bioinformatics and Biomedical Engineering, 2017

Parallel and Efficient Sensitivity Analysis of Microscopy Image Segmentation Workflows in Hybrid Systems.
Proceedings of the 2017 IEEE International Conference on Cluster Computing, 2017

Parallel Biological Sequence Comparison in Linear Space with Multiple Adjustable Bands.
Proceedings of the Algorithms for Computational Biology, 2017

2016
CUDAlign 4.0: Incremental Speculative Traceback for Exact Chromosome-Wide Alignment in GPU Clusters.
IEEE Trans. Parallel Distrib. Syst., 2016

MASA: A Multiplatform Architecture for Sequence Aligners with Block Pruning.
TOPC, 2016

Parallel Optimal Pairwise Biological Sequence Comparison: Algorithms, Platforms, and Classification.
ACM Comput. Surv., 2016

Efficient Methods and Parallel Execution for Algorithm Sensitivity Analysis with Parameter Tuning on Microscopy Imaging Datasets.
CoRR, 2016

Power-aware server consolidation for federated clouds.
Concurrency and Computation: Practice and Experience, 2016

Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment.
Bioinformatics, 2016

Autonomic Provisioning, Configuration, and Management of Inter-cloud Environments Based on a Software Product Line Engineering Method.
Proceedings of the 2016 International Conference on Cloud and Autonomic Computing, 2016

2015
Efficient Irregular Wavefront Propagation Algorithms on Intel(R) Xeon Phi(TM).
Proceedings of the 27th International Symposium on Computer Architecture and High Performance Computing, 2015

Parallel Megabase DNA Sequence Comparison with OpenCL.
Proceedings of the 22nd IEEE International Conference on High Performance Computing, 2015

Parallel A-Star Multiple Sequence Alignment with Locality-Sensitive Hash Functions.
Proceedings of the Ninth International Conference on Complex, 2015

Automating Resource Selection and Configuration in Inter-clouds through a Software Product Line Method.
Proceedings of the 8th IEEE International Conference on Cloud Computing, 2015

2014
Querying dynamic communities in online social networks.
Journal of Zhejiang University - Science C, 2014

Guest Editorial.
International Journal of Parallel Programming, 2014

A Framework for Adaptive Fault-Tolerant Execution of Workflows in the Grid: Empirical and Theoretical Analysis.
J. Grid Comput., 2014

An agent-based solution for dynamic multi-node wavefront balancing in biological sequence comparison.
Expert Syst. Appl., 2014

Fine-grain parallel megabase sequence comparison with multiple heterogeneous GPUs.
Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, 2014

HiCOMB Introduction and Committees.
Proceedings of the 2014 IEEE International Parallel & Distributed Processing Symposium Workshops, 2014

A Fine-grained Approach for Power Consumption Analysis and Prediction.
Proceedings of the International Conference on Computational Science, 2014

Excalibur: an autonomic cloud architecture for executing parallel applications.
Proceedings of the Fourth International Workshop on Cloud Data and Platforms, 2014

CUDAlign 3.0: Parallel Biological Sequence Comparison in Large GPU Clusters.
Proceedings of the 14th IEEE/ACM International Symposium on Cluster, 2014

2013
Retrieving Smith-Waterman Alignments with Optimizations for Megabase Biological Sequences Using GPU.
IEEE Trans. Parallel Distrib. Syst., 2013

Multiple biological sequence alignment in heterogeneous multicore clusters with user-selectable task allocation policies.
The Journal of Supercomputing, 2013

Parallel Smith-Waterman Comparison on Multicore and Manycore Computing Platforms with BSP++.
International Journal of Parallel Programming, 2013

MSA-GPU: Exact Multiple Sequence Alignment Using GPU.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2013


Biological Sequence Comparison on Hybrid Platforms with Dynamic Workload Adjustment.
Proceedings of the 2013 IEEE International Symposium on Parallel & Distributed Processing, 2013

Topic 11: Multicore and Manycore Programming - (Introduction).
Proceedings of the Euro-Par 2013 Parallel Processing, 2013

2012
A Protein Sequence Analysis Hardware Accelerator Based on Divergences.
Int. J. Reconfig. Comp., 2012

Exact Parallel Alignment of megabase genomic Sequences with Tunable Work Distribution.
Int. J. Found. Comput. Sci., 2012

An architecture for P2P bag-of-tasks execution with multiple task allocation policies in desktop grids.
Cluster Computing, 2012

Logical Model of Relationship for Online Social Networks and Performance Optimizing of Queries - WISE 2012 Challenge - T1: Performance Track Scalability Winner.
Proceedings of the Web Information Systems Engineering - WISE 2012, 2012

Parallel Simulated Annealing for Fragment Based Sequence Alignment.
Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, 2012

Record Route Elimination (RRE): An Energy-Efficient Broadcast Algorithm.
Proceedings of the Third International Conference on Networking and Computing, 2012

Executing a biological sequence comparison application on a federated cloud environment.
Proceedings of the 19th International Conference on High Performance Computing, 2012

Energy-Aware Multi-Agent Server Consolidation in Federated Clouds.
Proceedings of the Cloud Computing - Third International Conference, 2012

2011
Smith-Waterman Alignment of Huge Sequences with GPU in Linear Space.
Proceedings of the 25th IEEE International Symposium on Parallel and Distributed Processing, 2011

Hybrid MPI/OpenMP Strategy for Biological Multiple Sequence Alignment with DIALIGN-TX in Heterogeneous Multicore Clusters.
Proceedings of the 25th IEEE International Symposium on Parallel and Distributed Processing, 2011

A WS-Agreement-Based QoS Auditor Negotiation Mechanism for Grids.
Proceedings of the 12th IEEE/ACM International Conference on Grid Computing, 2011

A fragment based alignment in linear space.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

User-Defined Adaptive Fault-Tolerant Execution of Workflows in the Grid.
Proceedings of the 11th IEEE International Conference on Computer and Information Technology, 2011

2010
A Hardware Accelerator for the Fast Retrieval of DIALIGN Biological Sequence Alignments in Linear Space.
IEEE Trans. Computers, 2010

An adaptive multi-policy grid service for biological sequence comparison.
J. Parallel Distributed Comput., 2010

Impact Analysis Model for Brasília Area Control Center using Multi-agent System with Reinforcement Learning.
Proceedings of the 22nd International Conference on Software Engineering & Knowledge Engineering (SEKE'2010), Redwood City, San Francisco Bay, CA, USA, July 1, 2010

CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences.
Proceedings of the 15th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, 2010

Multiple Biological Sequence Alignment with a Parallel Island Injection Genetic Algorithm.
Proceedings of the 12th IEEE International Conference on High Performance Computing and Communications, 2010

A HMMER hardware accelerator using divergences.
Proceedings of the Design, Automation and Test in Europe, 2010

2009
Bag-of-Tasks Self-Scheduling over Range-Queriable Search Overlays.
Proceedings of the NPC 2009, 2009

Exact pairwise alignment of megabase genome biological sequences using a novel z-align parallel strategy.
Proceedings of the 23rd IEEE International Symposium on Parallel and Distributed Processing, 2009

2008
A parallel strategy for biological sequence alignment in restricted memory space.
J. Parallel Distributed Comput., 2008

A task allocation framework for biological sequence comparison applications in heterogeneous environments.
Proceedings of the 22nd IEEE International Symposium on Parallel and Distributed Processing, 2008

GrAMoS: A Flexible Service for WS-Agreement Monitoring in Grid Environments.
Proceedings of the Euro-Par 2008, 2008

2007
Parallel strategies for the local biological sequence alignment in a cluster of workstations.
J. Parallel Distributed Comput., 2007

An exact parallel algorithm to compare very long biological sequences in clusters of workstations.
Cluster Computing, 2007

Biological Sequence Comparison Application in Heterogeneous Environments with Dynamic Programming Algorithms.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2007

A Four-layered Semantic Grid Architecture.
Proceedings of the Nineteenth International Conference on Software Engineering & Knowledge Engineering (SEKE'2007), 2007

Reconfigurable Architecture for Biological Sequence Comparison in Reduced Memory Space.
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

An FPGA-Based Accelerator for Multiple Biological Sequence Alignment with DIALIGN.
Proceedings of the High Performance Computing, 2007

Bioinformatics Applications in Grid Computing Environments.
Proceedings of the Grid Computing for Bioinformatics and Computational Biology, 2007

2006
Integrating coordinated checkpointing and recovery mechanisms into DSM synchronization barriers.
ACM Journal of Experimental Algorithmics, 2006

PackageBLAST: an adaptive multi-policy grid service for biological sequence comparison.
Proceedings of the 2006 ACM Symposium on Applied Computing (SAC), 2006

A multiple task allocation framework for biological sequence comparison in a grid environment.
Proceedings of the 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), 2006

A Proposal and Evaluation of a Mechanism for Grid Ontology Merge.
Proceedings of the 20th Annual International Symposium on High Performance Computing Systems and Applications (HPCS 2006), 2006

Z-align: An Exact and Parallel Strategy for Local Biological Sequence Alignment in User-Restricted Memory Space.
Proceedings of the 2006 IEEE International Conference on Cluster Computing, 2006

An Extensible Resource Discovery Mechanism for Grid Computing Environments.
Proceedings of the Sixth IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2006), 2006

2005
Parallel Smith-Waterman Algorithm for Local DNA Comparison in a Cluster of Workstations.
Proceedings of the Experimental and Efficient Algorithms, 4th InternationalWorkshop, 2005

Integrating Coordinated Checkpointing and Recovery Mechanisms into DSM Synchronization Barriers.
Proceedings of the Experimental and Efficient Algorithms, 4th InternationalWorkshop, 2005

Obtaining possible execution histories on multiple memory consistency models.
Proceedings of the XXV International Conference of the Chilean Computer Science Society, 2005

Parallel Strategies for Local Biological Sequence Alignment in a Cluster of Workstations.
Proceedings of the 19th International Parallel and Distributed Processing Symposium (IPDPS 2005), 2005

Multiple Coherence and Coordinated Checkpointing Protocols for DSM Systems.
Proceedings of the 34th International Conference on Parallel Processing Workshops (ICPP 2005 Workshops), 2005

Method to Balance the Communication Among Multi-agents in Real Time Traffic Synchronization.
Proceedings of the Fuzzy Systems and Knowledge Discovery, Second International Conference, 2005

2004
Local DNA Sequence Alignment in a Cluster ofWorkstations: Algorithms and Tools.
J. Braz. Comp. Soc., 2004

Parallel Biological Sequence Comparison in Heterogeneous Systems Using CORBA.
Proceedings of the III Brazilian Workshop on Bioinformatics, 2004

Rede BIOFOCO: A distributed computation of Interpro Pfam, PROSITE and ProDom for protein annotation.
Proceedings of the III Brazilian Workshop on Bioinformatics, 2004

Distributed Knowledge Based System Using Grid Computing for Real Time Air Traffic Synchronization - ATFMGC.
Proceedings of the Sixteenth International Conference on Software Engineering & Knowledge Engineering (SEKE'2004), 2004

A Performance Evaluation of a Local DNA Sequence Alignment Algorithm on a Cluster of Workstations.
Proceedings of the 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), 2004

Using a DSM application to locally align DNA sequences.
Proceedings of the 4th IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid 2004), 2004

2003
Computing Binary Space Partition Trees using a Scope Consistent DSM System in a Cluster of Workstations.
Proceedings of the 11th Euromicro Workshop on Parallel, 2003

Parallel DNA Sequence Alignment Using a DSM System in a Cluster of Workstations.
Proceedings of the Computational Science - ICCS 2003, 2003

Comparing Two Long Biological Sequences Using a DSM System.
Proceedings of the Euro-Par 2003. Parallel Processing, 2003

2002
Using ant-behavior-based simulation model AntWeb to improve website organization.
Proceedings of the Data Mining and Knowledge Discovery: Theory, 2002

Integrating Optimistic Virtual Synchrony to a CORBA Object Group Service.
Proceedings of the On the Move to Meaningful Internet Systems, 2002, 2002

2001
Using a Classifier System to Improve Dynamic Load Balancing.
Proceedings of the 30th International Workshops on Parallel Processing (ICPP 2001 Workshops), 2001

Application-Controlled Coherence Protocols for Scope Consistent Software DSMs.
Proceedings of the High-Performance Computing and Networking, 9th International Conference, 2001

1999
Defining Uniform and Hybrid Memory Consistency Models on a Unified Framework.
Proceedings of the 32nd Annual Hawaii International Conference on System Sciences (HICSS-32), 1999

Visual-MCM: Visualising Execution Histories on Multiple Memory Consistency Models.
Proceedings of the Parallel Computation, 1999

1997
Multiple Memory Consistency Models on a SVM Parallel Programming Environment.
Proceedings of the On Principles Of Distributed Systems, 1997


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