Mario Stanke

According to our database1, Mario Stanke
  • authored at least 23 papers between 2003 and 2016.
  • has a "Dijkstra number"2 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Other 

Links

On csauthors.net:

Bibliography

2016
Simultaneous gene finding in multiple genomes.
Bioinformatics, 2016

BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS.
Bioinformatics, 2016

2015
Simultaneous gene finding in multiple genomes.
PeerJ PrePrints, 2015

2014
CRF-based models of protein surfaces improve protein-protein interaction site predictions.
BMC Bioinformatics, 2014

2013
WebAUGUSTUS - a web service for training AUGUSTUS and predicting genes in eukaryotes.
Nucleic Acids Research, 2013

2012
jpHMM: recombination analysis in viruses with circular genomes such as the hepatitis B virus.
Nucleic Acids Research, 2012

2011
Detection of viral sequence fragments of HIV-1 subfamilies yet unknown.
BMC Bioinformatics, 2011

A novel hybrid gene prediction method employing protein multiple sequence alignments.
Bioinformatics, 2011

2010
HIV classification using the coalescent theory.
Bioinformatics, 2010

2009
jpHMM: Improving the reliability of recombination prediction in HIV-1.
Nucleic Acids Research, 2009

AUGUSTUS at MediGRID: Adaption of a bioinformatics application to grid computing for efficient genome analysis.
Future Generation Comp. Syst., 2009

2008
The UCSC Genome Browser Database: 2008 update.
Nucleic Acids Research, 2008

Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species.
BMC Bioinformatics, 2008

Using native and syntenically mapped cDNA alignments to improve de novo gene finding.
Bioinformatics, 2008

2007
The UCSC genome browser database: update 2007.
Nucleic Acids Research, 2007

2006
jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1.
Nucleic Acids Research, 2006

AUGUSTUS: ab initio prediction of alternative transcripts.
Nucleic Acids Research, 2006

Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources.
BMC Bioinformatics, 2006

A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes.
BMC Bioinformatics, 2006

2005
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints.
Nucleic Acids Research, 2005

2004
Gene prediction with a hidden Markov model.
PhD thesis, 2004

AUGUSTUS: a web server for gene finding in eukaryotes.
Nucleic Acids Research, 2004

2003
Gene prediction with a hidden Markov model and a new intron submodel.
Proceedings of the European Conference on Computational Biology (ECCB 2003), 2003


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