Webb Miller

According to our database, Webb Miller authored at least 80 papers between 1970 and 2015.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2015

Identification of indels in next-generation sequencing data.

Aakrosh Ratan, Thomas L. Olson, Thomas P. Loughran, Webb Miller

BMC Bioinform., 2015

2014

Updates of the HbVar database of human hemoglobin variants and thalassemia mutations.

Belinda Giardine, Joseph Borg, Emmanouil Viennas, Cristiana Pavlidis, Kamran Moradkhani, Philippe Joly, Marina Bartsakoulia, Cathy Riemer, Webb Miller, Giannis Tzimas, Henri Wajcman, Ross C. Hardison, George P. Patrinos

Nucleic Acids Res., 2014

2011

Evaluation of methods for detecting conversion events in gene clusters.

Giltae Song, Chih-Hao Hsu, Cathy Riemer, Webb Miller

BMC Bioinform., 2011

2010

CAGE: Combinatorial Analysis of Gene-Cluster Evolution.

Giltae Song, Louxin Zhang, Tomás Vinar, Webb Miller

J. Comput. Biol., 2010

An Effective Method for Detecting Gene Conversion Events in Whole Genomes.

Chih-Hao Hsu, Yu Zhang, Ross C. Hardison, Eric D. Green, Webb Miller

J. Comput. Biol., 2010

Calling SNPs without a reference sequence.

Aakrosh Ratan, Yu Zhang, Vanessa M. Hayes, Stephan C. Schuster, Webb Miller

BMC Bioinform., 2010

Optimization Methods for Selecting Founder Populations for Captive Breeding of Endangered Species.

Webb Miller, Stephen J. Wright, Yu Zhang, Stephan C. Schuster, Vanessa M. Hayes

Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010

2009

Evolutionary History Reconstruction for Mammalian Complex Gene Clusters.

Yu Zhang, Giltae Song, Tomás Vinar, Eric D. Green, Adam C. Siepel, Webb Miller

J. Comput. Biol., 2009

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets.

Charles Addo-Quaye, Webb Miller, Michael J. Axtell

Bioinform., 2009

Inferring the Recent Duplication History of a Gene Cluster.

Giltae Song, Louxin Zhang, Tomás Vinar, Webb Miller

Proceedings of the Comparative Genomics, International Workshop, 2009

Whole-Genome Analysis of Gene Conversion Events.

Chih-Hao Hsu, Yu Zhang, Ross C. Hardison, Webb Miller

Proceedings of the Comparative Genomics, International Workshop, 2009

Aligning Two Genomic Sequences That Contain Duplications.

Minmei Hou, Cathy Riemer, Piotr Berman, Ross C. Hardison, Webb Miller

Proceedings of the Comparative Genomics, International Workshop, 2009

Simultaneous History Reconstruction for Complex Gene Clusters in Multiple Species.

Yu Zhang, Giltae Song, Chih-Hao Hsu, Webb Miller

Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

Session Introduction.

Bernard M. E. Moret, Webb Miller, Pavel A. Pevzner, David Sankoff

Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

2008

Approximating the Spanning Star Forest Problem and Its Application to Genomic Sequence Alignment.

C. Thach Nguyen, Jian Shen, Minmei Hou, Li Sheng, Webb Miller, Louxin Zhang

SIAM J. Comput., 2008

The infinite sites model of genome evolution.

Jian Ma, Aakrosh Ratan, Brian J. Raney, Bernard B. Suh, Webb Miller, David Haussler

Proc. Natl. Acad. Sci. USA, 2008

The UCSC Genome Browser Database: 2008 update.

Donna Karolchik, Robert M. Kuhn, Robert Baertsch, Galt P. Barber, Hiram Clawson, Mark Diekhans, Belinda Giardine, Rachel A. Harte, Angela S. Hinrichs, Fan Hsu, Kord M. Kober, Webb Miller, Jakob Skou Pedersen, Andy Pohl, Brian J. Raney, Brooke L. Rhead, Kate R. Rosenbloom, Kayla E. Smith, Mario Stanke, Archana Thakkapallayil, Heather Trumbower, Ting Wang, Ann S. Zweig, David Haussler, W. James Kent

Nucleic Acids Res., 2008

DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications.

Jian Ma, Aakrosh Ratan, Brian J. Raney, Bernard B. Suh, Louxin Zhang, Webb Miller, David Haussler

J. Comput. Biol., 2008

Reconstructing the Evolutionary History of Complex Human Gene Clusters.

Yu Zhang, Giltae Song, Tomás Vinar, Eric D. Green, Adam C. Siepel, Webb Miller

Proceedings of the Research in Computational Molecular Biology, 2008

2007

Approximating the spanning star forest problem and its applications to genomic sequence alignment.

C. Thach Nguyen, Jian Shen, Minmei Hou, Li Sheng, Webb Miller, Louxin Zhang

Proceedings of the Eighteenth Annual ACM-SIAM Symposium on Discrete Algorithms, 2007

A Heuristic Algorithm for Reconstructing Ancestral Gene Orders with Duplications.

Jian Ma, Aakrosh Ratan, Louxin Zhang, Webb Miller, David Haussler

Proceedings of the Comparative Genomics, RECOMB 2007 International Workshop, 2007

2006

Identification and Classification of Conserved RNA Secondary Structures in the Human Genome.

Jakob Skou Pedersen, Gill Bejerano, Adam C. Siepel, Kate R. Rosenbloom, Kerstin Lindblad-Toh, Eric S. Lander, Jim Kent, Webb Miller, David Haussler

PLoS Comput. Biol., 2006

Controlling Size When Aligning Multiple Genomic Sequences with Duplications.

Minmei Hou, Piotr Berman, Louxin Zhang, Webb Miller

Proceedings of the Algorithms in Bioinformatics, 6th International Workshop, 2006

2005

Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results.

Laura Elnitski, Belinda Giardine, Prachi Shah, Yi Zhang, Cathy Riemer, Matthew T. Weirauch, Richard Burhans, Webb Miller, Ross C. Hardison

Nucleic Acids Res., 2005

2004

Improvements in the HbVar database of human hemoglobin variants and thalassemia mutations for population and sequence variation studies.

George P. Patrinos, Belinda Giardine, Cathy Riemer, Webb Miller, David H. K. Chui, Nicholas P. Anagnou, Henri Wajcman, Ross C. Hardison

Nucleic Acids Res., 2004

EST clustering error evaluation and correction.

Ji-Ping Z. Wang, Bruce G. Lindsay, James H. Leebens-Mack, Liying Cui, P. Kerr Wall, Webb Colby Miller, Claude W. dePamphilis

Bioinform., 2004

2003

MultiPipMaker and supporting tools: alignments and analysis of multiple genomic DNA sequences.

Scott Schwartz, Laura Elnitski, Mei Li, Matthew T. Weirauch, Cathy Riemer, Arian Smit, Eric D. Green, Ross C. Hardison, Webb Miller

Nucleic Acids Res., 2003

EnteriX 2003: visualization tools for genome alignments of Enterobacteriaceae.

Liliana Florea, Michael McClelland, Cathy Riemer, Scott Schwartz, Webb Miller

Nucleic Acids Res., 2003

Significance of Interspecies Matches when Evolutionary Rate Varies.

Jia Li, Webb Miller

J. Comput. Biol., 2003

Aligning two fragmented sequences.

Vamsi Veeramachaneni, Piotr Berman, Webb Miller

Discret. Appl. Math., 2003

2002

Significance Of inter-species matches when evolutionary rate varies.

Jia Li, Webb Miller

Proceedings of the Sixth Annual International Conference on Computational Biology, 2002

2001

Comparison of genomic DNA sequences: solved and unsolved problems.

Webb Miller

Bioinform., 2001

2000

A Greedy Algorithm for Aligning DNA Sequences.

Zheng Zhang, Scott Schwartz, Lukas Wagner, Webb Miller

J. Comput. Biol., 2000

Winnowing Sequences from a Database Search.

Piotr Berman, Zheng Zhang, Yuri I. Wolf, Eugene V. Koonin, Webb Miller

J. Comput. Biol., 2000

Genome Sequence Comparisons: Hurdles in the Fast Lane to Functional Genomics.

Thomas Wiehe, Roderic Guigó, Webb Miller

Briefings Bioinform., 2000

1999

Post-processing long pairwise alignments.

Zheng Zhang, Piotr Berman, Thomas Wiehe, Webb Miller

Bioinform., 1999

1998

Alignments without Low-Scoring Regions.

Zheng Zhang, Piotr Berman, Webb Miller

J. Comput. Biol., 1998

1997

Aligning a DNA Sequence with a Protein Sequence.

Zheng Zhang, William R. Pearson, Webb Miller

J. Comput. Biol., 1997

A tool for aligning very similar DNA sequences.

Kun-Mao Chao, Jinghui Zhang, James Ostell, Webb Miller

Comput. Appl. Biosci., 1997

A Linear-Time Algorithm for the 1-Mismatch Problem.

Nikola Stojanovic, Piotr Berman, Deborah Gumucio, Ross C. Hardison, Webb Miller

Proceedings of the Algorithms and Data Structures, 5th International Workshop, 1997

1996

Progressive Multiple Alignment with Constraints.

Gene Myers, Sanford Selznick, Zheng Zhang, Webb Miller

J. Comput. Biol., 1996

Alignment-to-Alignment Editing with "Move Gap" Operations.

Martin Fürer, Webb Miller

Int. J. Found. Comput. Sci., 1996

Local Multiple Alignment Via Subgraph Enumeration.

Z. Zhang, B. He, Webb Miller

Discret. Appl. Math., 1996

1995

A local alignment tool for very long DNA sequences.

Kun-Mao Chao, Jinghui Zhang, James Ostell, Webb Miller

Comput. Appl. Biosci., 1995

Linear-Space Algorithms that Build Local Alignments from Fragments.

Kun-Mao Chao, Webb Miller

Algorithmica, 1995

Chaining Multiple-Alignment Fragments in Sub-Quadratic Time.

Gene Myers, Webb Miller

Proceedings of the Sixth Annual ACM-SIAM Symposium on Discrete Algorithms, 1995

A database for globin gene expression data.

Webb Miller, Ahmed Elsherbini, Jamie Peck, Cathy Riemer, Scott Schwartz, Nikola Stojanovic, Ross C. Hardison

Proceedings of the 28th Annual Hawaii International Conference on System Sciences (HICSS-28), 1995

1994

Chaining Multiple-Alignment Blocks.

Zheng Zhang, Balaji Raghavachari, Ross C. Hardison, Webb Miller

J. Comput. Biol., 1994

Constructing Aligned Sequence Blocks.

Webb Miller, Mark Boguski, Balaji Raghavachari, Zheng Zhang, Ross C. Hardison

J. Comput. Biol., 1994

Recent Developments in Linear-Space Alignment Methods: A Survey.

Kun-Mao Chao, Ross C. Hardison, Webb Miller

J. Comput. Biol., 1994

A note about computing all local alignments.

Webb Miller, Mark Boguski

Comput. Appl. Biosci., 1994

Parametric Recomuting in Alignment Graphs.

Xiaoqiu Huang, Pavel A. Pevzner, Webb Miller

Proceedings of the Combinatorial Pattern Matching, 5th Annual Symposium, 1994

1993

Building multiple alignments from pairwise alignments.

Webb Miller

Comput. Appl. Biosci., 1993

Locating well-conserved regions within a pairwise alignment.

Kun-Mao Chao, Ross C. Hardison, Webb Miller

Comput. Appl. Biosci., 1993

1992

Parallelization of a local similarity algorithm.

Xiaoqiu Huang, Webb Miller, Scott Schwartz, Ross C. Hardison

Comput. Appl. Biosci., 1992

Aligning two sequences within a specified diagonal band.

Kun-Mao Chao, William R. Pearson, Webb Miller

Comput. Appl. Biosci., 1992

1991

Improved algorithms for searching restriction maps.

Webb Miller, John Barr, Kenneth E. Rudd

Comput. Appl. Biosci., 1991

1990

An O(NP) Sequence Comparison Algorithm.

Sun Wu, Udi Manber, Gene Myers, Webb Miller

Inf. Process. Lett., 1990

An algorithm for searching restriction maps.

Webb Miller, James Ostell, Kenneth E. Rudd

Comput. Appl. Biosci., 1990

A space-efficient algorithm for local similarities.

Xiaoqiu Huang, Ross C. Hardison, Webb Miller

Comput. Appl. Biosci., 1990

1989

Row Replacement Algorithms for Screen Editors.

Eugene W. Myers, Webb Miller

ACM Trans. Program. Lang. Syst., 1989

1988

A Simple Row-replacement Method.

Webb Miller, Eugene W. Myers

Softw. Pract. Exp., 1988

Optimal alignments in linear space.

Eugene W. Myers, Webb Miller

Comput. Appl. Biosci., 1988

1986

Side-effects in Automatic File Updating.

Webb Miller, Eugene W. Myers

Softw. Pract. Exp., 1986

1985

A File Comparison Program.

Webb Miller, Eugene W. Myers

Softw. Pract. Exp., 1985

1979

Reducibility Among Floating-Point Graphs.

Donald B. Johnson, Webb Miller, Brian Minnihan, Celia Wrathall

J. ACM, 1979

1978

Algorithm 532: Software for Roundoff Analysis [Z].

Webb Miller, David L. Spooner

ACM Trans. Math. Softw., 1978

Software for Roundoff Analysis II.

Webb Miller, David L. Spooner

ACM Trans. Math. Softw., 1978

A case for TOOLPACK.

Webb Miller

Proceedings of the SIGNUM Conference on the Programming Environment for Development of Numerical Software, 1978

1976

Automatic Generation of Floating-Point Test Data.

Webb Miller, David L. Spooner

IEEE Trans. Software Eng., 1976

Graph Transformations for Roundoff Analysis.

Webb Miller

SIAM J. Comput., 1976

1975

Software for Roundoff Analysis.

Webb Miller

ACM Trans. Math. Softw., 1975

Computational Complexity and Numerical Stability.

Webb Miller

SIAM J. Comput., 1975

Computer Search for Numerical Instability.

Webb Miller

J. ACM, 1975

The Error in Interval Arithmetic.

Webb Miller

Proceedings of the Interval Mathemantics: Proceedings of the International Symposium, 1975

1974

Remarks on the complexity of roundoff analysis.

Webb Miller

Computing, 1974

1973

Toward Abstract Numerical Analysis.

Webb Miller

J. ACM, 1973

Toward Mechanical Verification of Properties of Roundoff Error Propagation

Webb Miller

Proceedings of the 5th Annual ACM Symposium on Theory of Computing, April 30, 1973

1972

Automatic a priori round-off analysis - Part I: Arithmetic Conditions.

Webb Miller

Computing, 1972

1970

Recursive Function Theory and Numerical Analysis.

Webb Miller

J. Comput. Syst. Sci., 1970