Gill Bejerano

According to our database, Gill Bejerano authored at least 26 papers between 1999 and 2022.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2022

WhichTF is functionally important in your open chromatin data?

Yosuke Tanigawa, Ethan Dyer, Gill Bejerano

PLoS Comput. Biol., 2022

2021

Avoiding genetic racial profiling in criminal DNA profile databases.

Jacob A. Blindenbach, Karthik Anand Jagadeesh, Gill Bejerano, David J. Wu

Nat. Comput. Sci., 2021

2019

Darwin: A Genomics Coprocessor.

Yatish Turakhia, Gill Bejerano, William J. Dally

IEEE Micro, 2019

Darwin: A Genomics Co-processor Provides up to 15, 000X Acceleration on Long Read Assembly.

Yatish Turakhia, Gill Bejerano, William J. Dally

Proceedings of the 2019 USENIX Annual Technical Conference, 2019

Darwin-WGA: A Co-processor Provides Increased Sensitivity in Whole Genome Alignments with High Speedup.

Yatish Turakhia, Sneha D. Goenka, Gill Bejerano, William J. Dally

Proceedings of the 25th IEEE International Symposium on High Performance Computer Architecture, 2019

2016

Erosion of Conserved Binding Sites in Personal Genomes Points to Medical Histories.

Harendra Guturu, Sandeep Chinchali, Shoa L. Clarke, Gill Bejerano

PLoS Comput. Biol., 2016

2014

Automated Discovery of Tissue-Targeting Enhancers and Transcription Factors from Binding Motif and Gene Function Data.

Geetu Tuteja, Karen Betancourt Moreira, Tisha Chung, Jenny Chen, Aaron M. Wenger, Gill Bejerano

PLoS Comput. Biol., 2014

2007

The UCSC genome browser database: update 2007.

Robert M. Kuhn, Donna Karolchik, Ann S. Zweig, Heather Trumbower, Daryl J. Thomas, Archana Thakkapallayil, Charles W. Sugnet, Mario Stanke, Kayla E. Smith, Adam C. Siepel, Kate R. Rosenbloom, Brooke L. Rhead, Brian J. Raney, Andy Pohl, Jakob Skou Pedersen, Fan Hsu, Angela S. Hinrichs, Rachel A. Harte, Mark Diekhans, Hiram Clawson, Gill Bejerano, Galt P. Barber, Robert Baertsch, David Haussler, W. James Kent

Nucleic Acids Res., 2007

2006

Identification and Classification of Conserved RNA Secondary Structures in the Human Genome.

Jakob Skou Pedersen, Gill Bejerano, Adam C. Siepel, Kate R. Rosenbloom, Kerstin Lindblad-Toh, Eric S. Lander, Jim Kent, Webb Miller, David Haussler

PLoS Comput. Biol., 2006

The UCSC Genome Browser Database: update 2006.

Angela S. Hinrichs, Donna Karolchik, Robert Baertsch, Galt P. Barber, Gill Bejerano, Hiram Clawson, Mark Diekhans, Terrence S. Furey, Rachel A. Harte, Fan Hsu, Jennifer Hillman-Jackson, Robert M. Kuhn, Jakob Skou Pedersen, Andy Pohl, Brian J. Raney, Kate R. Rosenbloom, Adam C. Siepel, Kayla E. Smith, Charles W. Sugnet, A. Sultan-Qurraie, Daryl J. Thomas, Heather Trumbower, Ryan J. Weber, M. Weirauch, Ann S. Zweig, David Haussler, W. James Kent

Nucleic Acids Res., 2006

Branch and bound computation of exact <i>p</i>-values.

Gill Bejerano

Bioinform., 2006

2004

Efficient Exact p-Value Computation for Small Sample, Sparse, and Surprising Categorical Data.

Gill Bejerano, Nir Friedman, Naftali Tishby

J. Comput. Biol., 2004

Algorithms for variable length Markov chain modeling.

Gill Bejerano

Bioinform., 2004

Into the heart of darkness: large-scale clustering of human non-coding DNA.

Gill Bejerano, David Haussler, Mathieu Blanchette

Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004

2003

Automata learning and stocahstic modeling for biosequence analysis (למידת אוטומטים ומידול סטוכסטי לצרכי ניתוח רצפי מולקולות ביולוגיות.).

Gill Bejerano

PhD thesis, 2003

Discriminative Feature Selection via Multiclass Variable Memory Markov Model.

Noam Slonim, Gill Bejerano, Shai Fine, Naftali Tishby

EURASIP J. Adv. Signal Process., 2003

Using Machine-Learning Methods for Musical Style Modeling.

Shlomo Dubnov, Gérard Assayag, Olivier Lartillot, Gill Bejerano

Computer, 2003

Efficient exact value computation and applications to biosequence analysis.

Gill Bejerano

Proceedings of the Sventh Annual International Conference on Computational Biology, 2003

2001

PromEC: An updated database of Escherichia coli mRNA promoters with experimentally identified transcriptional start sites.

Ruti Hershberg, Gill Bejerano, Alberto Santos-Zavaleta, Hanah Margalit

Nucleic Acids Res., 2001

Variations on probabilistic suffix trees: statistical modeling and prediction of protein families.

Gill Bejerano, Golan Yona

Bioinform., 2001

Markovian domain fingerprinting: statistical segmentation of protein sequences.

Gill Bejerano, Yevgeny Seldin, Hanah Margalit, Naftali Tishby

Bioinform., 2001

A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding Sites.

Yoseph Barash, Gill Bejerano, Nir Friedman

Proceedings of the Algorithms in Bioinformatics, First International Workshop, 2001

Unsupervised Sequence Segmentation by a Mixture of Switching Variable Memory Markov Sources.

Yevgeny Seldin, Gill Bejerano, Naftali Tishby

Proceedings of the Eighteenth International Conference on Machine Learning (ICML 2001), Williams College, Williamstown, MA, USA, June 28, 2001

Automatic Modeling of Musical Style.

Olivier Lartillot, Shlomo Dubnov, Gérard Assayag, Gill Bejerano

Proceedings of the 2001 International Computer Music Conference, 2001

2000

Optimal Amnesic Probabilistic Automata or How to Learn and Classify Proteins in Linear Time and Space.

Alberto Apostolico, Gill Bejerano

J. Comput. Biol., 2000

1999

Modeling protein families using probabilistic suffix trees.

Gill Bejerano, Golan Yona

Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, 1999