Burkhard Morgenstern

According to our database1, Burkhard Morgenstern authored at least 67 papers between 1996 and 2018.

Collaborative distances:



In proceedings 
PhD thesis 


On csauthors.net:


Multi-SpaM: A Maximum-Likelihood Approach to Phylogeny Reconstruction Using Multiple Spaced-Word Matches and Quartet Trees.
Proceedings of the Comparative Genomics - 16th International Conference, 2018

Fast and accurate phylogeny reconstruction using filtered spaced-word matches.
Bioinformatics, 2017

Phylogeny reconstruction based on the length distribution of k-mismatch common substrings.
Algorithms for Molecular Biology, 2017

rasbhari: Optimizing Spaced Seeds for Database Searching, Read Mapping and Alignment-Free Sequence Comparison.
PLoS Computational Biology, 2016

RasBhari: optimizing spaced seeds for database searching, read mapping and alignment-free sequence comparison.
CoRR, 2015

Estimating evolutionary distances between genomic sequences from spaced-word matches.
Algorithms for Molecular Biology, 2015

Spaced words and kmacs: fast alignment-free sequence comparison based on inexact word matches.
Nucleic Acids Research, 2014

kmacs: the k-mismatch average common substring approach to alignment-free sequence comparison.
Bioinformatics, 2014

Fast alignment-free sequence comparison using spaced-word frequencies.
Bioinformatics, 2014

Estimating Evolutionary Distances from Spaced-Word Matches.
Proceedings of the Algorithms in Bioinformatics - 14th International Workshop, 2014

DIALIGN at GOBICS - multiple sequence alignment using various sources of external information.
Nucleic Acids Research, 2013

Alignment-free sequence comparison with spaced k-mers.
Proceedings of the German Conference on Bioinformatics 2013, 2013

jpHMM: recombination analysis in viruses with circular genomes such as the hepatitis B virus.
Nucleic Acids Research, 2012

Using protein-domain information for multiple sequence alignment.
Proceedings of the 12th IEEE International Conference on Bioinformatics & Bioengineering, 2012

Detection of viral sequence fragments of HIV-1 subfamilies yet unknown.
BMC Bioinformatics, 2011

MolabIS - An Integrated Information System for Storing and Managing Molecular Genetics Data.
BMC Bioinformatics, 2011

DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS.
Nucleic Acids Research, 2010

A min-cut algorithm for the consistency problem in multiple sequence alignment.
Bioinformatics, 2010

HIV classification using the coalescent theory.
Bioinformatics, 2010

jpHMM: Improving the reliability of recombination prediction in HIV-1.
Nucleic Acids Research, 2009

OrthoSelect: a web server for selecting orthologous gene alignments from EST sequences.
Nucleic Acids Research, 2009

AUGUSTUS at MediGRID: Adaption of a bioinformatics application to grid computing for efficient genome analysis.
Future Generation Comp. Syst., 2009

OrthoSelect: a protocol for selecting orthologous groups in phylogenomics.
BMC Bioinformatics, 2009

Gene prediction in metagenomic fragments: A large scale machine learning approach.
BMC Bioinformatics, 2008

Stability of multiple alignments and phylogenetic trees: an analysis of ABC-transporter proteins family.
Algorithms for Molecular Biology, 2008

DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment.
Algorithms for Molecular Biology, 2008

Metabolite-based clustering and visualization of mass spectrometry data using one-dimensional self-organizing maps.
Algorithms for Molecular Biology, 2008

jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1.
Nucleic Acids Research, 2006

TICO: a tool for postprocessing the predictions of prokaryotic translation initiation sites.
Nucleic Acids Research, 2006

AUGUSTUS: ab initio prediction of alternative transcripts.
Nucleic Acids Research, 2006

Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources.
BMC Bioinformatics, 2006

A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes.
BMC Bioinformatics, 2006

New journal: Algorithms for Molecular Biology.
Algorithms for Molecular Biology, 2006

Multiple sequence alignment with user-defined anchor points.
Algorithms for Molecular Biology, 2006

AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints.
Nucleic Acids Research, 2005

Multiple alignment of genomic sequences using CHAOS, DIALIGN and ABC.
Nucleic Acids Research, 2005

DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment.
BMC Bioinformatics, 2005

TICO: a tool for improving predictions of prokaryotic translation initiation sites.
Bioinformatics, 2005

Multiple sequence alignment with user-defined constraints at GOBICS.
Bioinformatics, 2005

AGenDA: gene prediction by cross-species sequence comparison.
Nucleic Acids Research, 2004

AUGUSTUS: a web server for gene finding in eukaryotes.
Nucleic Acids Research, 2004

DIALIGN: multiple DNA and protein sequence alignment at BiBiServ.
Nucleic Acids Research, 2004

The CHAOS/DIALIGN WWW server for multiple alignment of genomic sequences.
Nucleic Acids Research, 2004

DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors.
BMC Bioinformatics, 2004

Oligo kernels for datamining on biological sequences: a case study on prokaryotic translation initiation sites.
BMC Bioinformatics, 2004

Multiple sequence alignment with user-defined constraints.
Proceedings of the German Conference on Bioinformatics (GCB 2004), Bielefeld, 2004

Fast and sensitive multiple alignment of large genomic sequences.
BMC Bioinformatics, 2003

AGenDA: homology-based gene prediction.
Bioinformatics, 2003

AltAVisT: Comparing alternative multiple sequence alignments.
Bioinformatics, 2003

Divide-and-conquer multiple alignment with segment-based constraints.
Proceedings of the European Conference on Computational Biology (ECCB 2003), 2003

MIPS: a database for genomes and protein sequences.
Nucleic Acids Research, 2002

AGenDA: Gene prediction by comparative sequence analysis.
In Silico Biology, 2002

Exon discovery by genomic sequence alignment.
Bioinformatics, 2002

A simple and space-efficient fragment-chaining algorithm for alignment of DNA and protein sequences.
Appl. Math. Lett., 2002

Fast and Sensitive Alignment of Large Genomic Sequences.
Proceedings of the 1st IEEE Computer Society Bioinformatics Conference, 2002

The HIB database of annotated UniGene clusters.
Bioinformatics, 2001

Gene prediction by comparative sequence analysis.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

A space-efficient algorithm for aligning large genomic sequences.
Bioinformatics, 2000

Speeding Up the DIALIGN Multiple Alignment Program by Using the 'Greedy Alignment of BIOlogical Sequences LIBrary' (GABIOS-LIB).
Proceedings of the Computational Biology, 2000

DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment.
Bioinformatics, 1999

An exact solution for the segment-to-segment multiple sequence alignment problem.
Bioinformatics, 1999

DIALIGN: finding local similarities by multiple sequence alignment.
Bioinformatics, 1998

Segment-Based Scores for Pairwise and Multiple Sequence Alignments.
Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28, 1998

An exact solution for the Segment-to-Segment multiple sequence alignment problem.
German Conference on Bioinformatics, 1998

DIALIGN2: Improvement of the segment to segment approach to multiple sequence alignment.
German Conference on Bioinformatics, 1998

Dialign 1.0: Multiple alignment by Segment rather than by Position comparison.
German Conference on Bioinformatics, 1997

Sequenzalignment auf der Basis von Segmentvergleichen.
PhD thesis, 1996