Mary Shimoyama

According to our database1, Mary Shimoyama authored at least 35 papers between 2002 and 2020.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Other 

Links

On csauthors.net:

Bibliography

2020
Automated generation of gene summaries at the Alliance of Genome Resources.
Database J. Biol. Databases Curation, 2020

2019
Predicting instances of pathway ontology classes for pathway integration.
J. Biomed. Semant., 2019

Quantitative phenotype analysis to identify, validate and compare rat disease models.
Database J. Biol. Databases Curation, 2019

Integrated curation and data mining for disease and phenotype models at the Rat Genome Database.
Database J. Biol. Databases Curation, 2019

PhenoGeneRanker: A Tool for Gene Prioritization Using Complete Multiplex Heterogeneous Networks.
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

2018
Adapting Disease Vocabularies for Curation at the Rat Genome Database.
Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018

2017
Novel Unsupervised Named Entity Recognition Used in Text Annotation Tool (OntoMate) At Rat Genome Database.
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

2016
The Chinchilla Research Resource Database: resource for an otolaryngology disease model.
Database J. Biol. Databases Curation, 2016

The Disease Portals, disease-gene annotation and the RGD disease ontology at the Rat Genome Database.
Database J. Biol. Databases Curation, 2016

Introducing a Text Annotation Tool (OntoMate), Assisting Curation at Rat Genome Database.
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016


2015
The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease.
Nucleic Acids Res., 2015

PhenoMiner: a quantitative phenotype database for the laboratory rat, <i>Rattus norvegicus</i>. Application in hypertension and renal disease.
Database J. Biol. Databases Curation, 2015

OntoMate: a text-mining tool aiding curation at the Rat Genome Database.
Database J. Biol. Databases Curation, 2015

2014
The pathway ontology - updates and applications.
J. Biomed. Semant., 2014

2013
The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications.
J. Biomed. Semant., 2013

The Vertebrate Trait Ontology: a controlled vocabulary for the annotation of trait data across species.
J. Biomed. Semant., 2013

Rat Strain Ontology: structured controlled vocabulary designed to facilitate access to strain data at RGD.
J. Biomed. Semant., 2013

Analysis of disease-associated objects at the Rat Genome Database.
Database J. Biol. Databases Curation, 2013

PhenoMiner: quantitative phenotype curation at the rat genome database.
Database J. Biol. Databases Curation, 2013

The Rat Genome Database 2013 - data, tools and users.
Briefings Bioinform., 2013

Next generation ontology browser.
Proceedings of the 4th International Conference on Biomedical Ontology, 2013

Innovative Use of Ontologies: Association of Physiological Pathways to Corresponding Computational Models and Disparate Data Types.
Proceedings of the AMIA 2013, 2013

Inadvertent Disclosure of Protected Health Information (PHI) in Randomly Shifted Date Elements for De-identification.
Proceedings of the AMIA 2013, 2013

2012
Ontology searching and browsing at the Rat Genome Database.
Database J. Biol. Databases Curation, 2012

Ontologies Put More Meaning into Meaningful Use.
Proceedings of the 5th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2012

Making Computational Models Accessible through Ontologies and Visualization Tools.
Proceedings of the AMIA 2012, 2012

Gene Annotator Tool.
Proceedings of the AMIA 2012, 2012

2011
The Rat Genome Database Pathway Portal.
Database J. Biol. Databases Curation, 2011

The Rat Genome Database curation tool suite: a set of optimized software tools enabling efficient acquisition, organization, and presentation of biological data.
Database J. Biol. Databases Curation, 2011

2009
The Rat Genome Database Curators: Who, What, Where, Why.
PLoS Comput. Biol., 2009

The Rat Genome Database 2009: variation, ontologies and pathways.
Nucleic Acids Res., 2009

2007
The Rat Genome Database, update 2007 - Easing the path from disease to data and back again.
Nucleic Acids Res., 2007

2005
The Rat Genome Database (RGD): developments towards a phenome database.
Nucleic Acids Res., 2005

2002
Rat Genome Database (RGD): mapping disease onto the genome.
Nucleic Acids Res., 2002


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