J. Michael Cherry

According to our database1, J. Michael Cherry authored at least 62 papers between 1998 and 2021.

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Bibliography

2021
The Gene Ontology resource: enriching a GOld mine.
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Nucleic Acids Res., 2021

2020
Transcriptome visualization and data availability at the Saccharomyces Genome Database.
Nucleic Acids Res., 2020

New developments on the Encyclopedia of DNA Elements (ENCODE) data portal.
Nucleic Acids Res., 2020

Alliance of Genome Resources Portal: unified model organism research platform.
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Nucleic Acids Res., 2020

Incorporation of a unified protein abundance dataset into the Saccharomyces genome database.
Database J. Biol. Databases Curation, 2020

2019
Integration of macromolecular complex data into the Saccharomyces Genome Database.
Database J. Biol. Databases Curation, 2019

2018
Saccharomyces genome database informs human biology.
Nucleic Acids Res., 2018

The Encyclopedia of DNA elements (ENCODE): data portal update.
Nucleic Acids Res., 2018

Prevention of data duplication for high throughput sequencing repositories.
Database J. Biol. Databases Curation, 2018

Updated regulation curation model at the Saccharomyces Genome Database.
Database J. Biol. Databases Curation, 2018

2017
Outreach and online training services at the Saccharomyces Genome Database.
Database J. Biol. Databases Curation, 2017

Curated protein information in the Saccharomyces genome database.
Database J. Biol. Databases Curation, 2017

2016
ENCODE data at the ENCODE portal.
Nucleic Acids Res., 2016

The <i>Saccharomyces</i> Genome Database Variant Viewer.
Nucleic Acids Res., 2016

Integration of new alternative reference strain genome sequences into the <i>Saccharomyces</i> genome database.
Database J. Biol. Databases Curation, 2016

Principles of metadata organization at the ENCODE data coordination center.
Database J. Biol. Databases Curation, 2016

From one to many: expanding the <i>Saccharomyces cerevisiae</i> reference genome panel.
Database J. Biol. Databases Curation, 2016

Making Linked Data SPARQL with the InterMine Biological Data Warehouse.
Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, 2016

Semantic Research Platform for Model Organisms.
Proceedings of the First International Workshop on Biomedical Data Integration and Discovery (BMDID 2016) co-located with The 15th International Semantic Web Conference (ISWC 2016), 2016

2015
Ontology application and use at the ENCODE DCC.
Database J. Biol. Databases Curation, 2015

2014
<i>Saccharomyces</i> genome database provides new regulation data.
Nucleic Acids Res., 2014

2013
The YeastGenome app: the <i>Saccharomyces</i> Genome Database at your fingertips.
Database J. Biol. Databases Curation, 2013

DATABASE, <i>The Journal of Biological Databases and Curation</i>, is now the official journal of the International Society for Biocuration.
Database J. Biol. Databases Curation, 2013

The new modern era of yeast genomics: community sequencing and the resulting annotation of multiple <i>Saccharomyces cerevisiae</i> strains at the <i>Saccharomyces</i> Genome Database.
Database J. Biol. Databases Curation, 2013

A guide to best practices for Gene Ontology (GO) manual annotation.
Database J. Biol. Databases Curation, 2013

2012
Saccharomyces Genome Database: the genomics resource of budding yeast.
Nucleic Acids Res., 2012

CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations.
Database J. Biol. Databases Curation, 2012

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference.
Database J. Biol. Databases Curation, 2012

Considerations for creating and annotating the budding yeast Genome Map at SGD: a progress report.
Database J. Biol. Databases Curation, 2012

Biocurators and Biocuration: surveying the 21st century challenges.
Database J. Biol. Databases Curation, 2012

YeastMine - an integrated data warehouse for <i>Saccharomyces cerevisiae</i> data as a multipurpose tool-kit.
Database J. Biol. Databases Curation, 2012

2011
Toward an interactive article: integrating journals and biological databases.
BMC Bioinform., 2011

Towards BioDBcore: a community-defined information specification for biological databases.
Database J. Biol. Databases Curation, 2011

Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study.
Database J. Biol. Databases Curation, 2011

2010
<i>Saccharomyces</i> Genome Database provides mutant phenotype data.
Nucleic Acids Res., 2010

2009
New mutant phenotype data curation system in the <i>Saccharomyces</i> Genome Database.
Database J. Biol. Databases Curation, 2009

2008
Gene Ontology annotations at SGD: new data sources and annotation methods.
Nucleic Acids Res., 2008

2007
Expanded protein information at SGD: new pages and proteome browser.
Nucleic Acids Res., 2007

Mining experimental evidence of molecular function claims from the literature.
Bioinform., 2007

2006
<i>Tetrahymena</i> Genome Database (TGD): a new genomic resource for <i>Tetrahymena thermophila</i> research.
Nucleic Acids Res., 2006

Genome Snapshot: a new resource at the <i>Saccharomyces</i> Genome Database (SGD) presenting an overview of the <i>Saccharomyces cerevisiae</i> genome.
Nucleic Acids Res., 2006

2005
PatMatch: a program for finding patterns in peptide and nucleotide sequences.
Nucleic Acids Res., 2005

Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the <i>Saccharomyces</i> Genome Database (SGD).
Nucleic Acids Res., 2005

2004
A short study on the success of the Gene Ontology.
J. Web Semant., 2004

GermOnline, a cross-species community knowledgebase on germ cell differentiation.
Nucleic Acids Res., 2004

Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms.
Nucleic Acids Res., 2004

Database model and specification of GermOnline Release 2.0, a cross-species community annotation knowledgebase on germ cell differentiation.
Bioinform., 2004

GO: : TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes.
Bioinform., 2004

Saccharomyces genome database: Underlying principles and organisation.
Briefings Bioinform., 2004

Concept Extraction and Synonymy Management for Biomedical Information Retrieval.
Proceedings of the Thirteenth Text REtrieval Conference, 2004

2003
Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteins.
Nucleic Acids Res., 2003

SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data.
Nucleic Acids Res., 2003


2002
Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO).
Nucleic Acids Res., 2002

2001
The Stanford Microarray Database.
Nucleic Acids Res., 2001

Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data.
Nucleic Acids Res., 2001

Visualization of expression clusters using Sammon's non-linear mapping.
Bioinform., 2001

2000
Integrating functional genomic information into the Saccharomyces Genome Database.
Nucleic Acids Res., 2000

1999
Unified display of Arabidopsis thaliana physical maps from AtDB, the A.thaliana database.
Nucleic Acids Res., 1999

Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure.
Nucleic Acids Res., 1999

1998
AtDB, the Arabidopsis thaliana database, and graphical-web-display of progress by the Arabidopsis Genome Initiative.
Nucleic Acids Res., 1998

SGD: Saccharomyces Genome Database.
Nucleic Acids Res., 1998


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