Kimberly Van Auken

Orcid: 0000-0002-1706-4196

According to our database1, Kimberly Van Auken authored at least 31 papers between 2004 and 2023.

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Bibliography

2023
Semantic representation of neural circuit knowledge in Caenorhabditis elegans.
Brain Informatics, December, 2023

2021
The Gene Ontology resource: enriching a GOld mine.
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Nucleic Acids Res., 2021

Reactome and the Gene Ontology: digital convergence of data resources.
Bioinform., 2021

2020
WormBase: a modern Model Organism Information Resource.
Nucleic Acids Res., 2020

Alliance of Genome Resources Portal: unified model organism research platform.
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Nucleic Acids Res., 2020

Text mining meets community curation: a newly designed curation platform to improve author experience and participation at WormBase.
Database J. Biol. Databases Curation, 2020

2019
Annotation of gene product function from high-throughput studies using the Gene Ontology.
Database J. Biol. Databases Curation, 2019

2018
WormBase 2017: molting into a new stage.
Nucleic Acids Res., 2018

Textpresso Central: a customizable platform for searching, text mining, viewing, and curating biomedical literature.
BMC Bioinform., 2018

2016
WormBase 2016: expanding to enable helminth genomic research.
Nucleic Acids Res., 2016

Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology.
J. Biomed. Informatics, 2016

Overview of the interactive task in BioCreative V.
Database J. Biol. Databases Curation, 2016

2014
WormBase 2014: new views of curated biology.
Nucleic Acids Res., 2014

A method for increasing expressivity of Gene Ontology annotations using a compositional approach.
BMC Bioinform., 2014

Overview of the gene ontology task at BioCreative IV.
Database J. Biol. Databases Curation, 2014

BC4GO: a full-text corpus for the BioCreative IV GO task.
Database J. Biol. Databases Curation, 2014

2013
A guide to best practices for Gene Ontology (GO) manual annotation.
Database J. Biol. Databases Curation, 2013

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.
Database J. Biol. Databases Curation, 2013

2012
WormBase 2012: more genomes, more data, new website.
Nucleic Acids Res., 2012

Automatic categorization of diverse experimental information in the bioscience literature.
BMC Bioinform., 2012

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference.
Database J. Biol. Databases Curation, 2012

Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR.
Database J. Biol. Databases Curation, 2012

2011
The BioGRID Interaction Database: 2011 update.
Nucleic Acids Res., 2011

2010
WormBase: a comprehensive resource for nematode research.
Nucleic Acids Res., 2010

2009
Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation.
BMC Bioinform., 2009

2008
WormBase 2007.
Nucleic Acids Res., 2008

Textpresso - an Information Retrieval and Extraction System for Biological Literature.
Proceedings of the Ontologies and Text Mining for Life Sciences: Current Status and Future Perspectives, 24.03., 2008

2007
WormBase: new content and better access.
Nucleic Acids Res., 2007

2006
WormBase: better software, richer content.
Nucleic Acids Res., 2006

2005
WormBase: a comprehensive data resource for <i>Caenorhabditis</i> biology and genomics.
Nucleic Acids Res., 2005

2004
WormBase: a multi-species resource for nematode biology and genomics.
Nucleic Acids Res., 2004


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