Marzio Pennisi

According to our database1, Marzio Pennisi authored at least 52 papers between 2007 and 2020.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

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PhD thesis 
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Bibliography

2020
Credibility of In Silico Trial Technologies - A Theoretical Framing.
IEEE J. Biomedical and Health Informatics, 2020

2019
POSITION PAPER: Credibility of In Silico Trial Technologies: A Theoretical Framing.
CoRR, 2019

Predicting the artificial immunity induced by RUTI® vaccine against tuberculosis using universal immune system simulator (UISS).
BMC Bioinformatics, 2019

Parallelisation strategies for agent based simulation of immune systems.
BMC Bioinformatics, 2019

EpiMethEx: a tool for large-scale integrated analysis in methylation hotspots linked to genetic regulation.
BMC Bioinformatics, 2019

Computational modeling reveals MAP3K8 as mediator of resistance to vemurafenib in thyroid cancer stem cells.
Bioinformatics, 2019

A MapReduce Based Tool for the Analysis and Discovery of Novel Therapeutic Targets.
Proceedings of the 27th Euromicro International Conference on Parallel, 2019

Gene expression and pathway bioinformatics analysis detect a potential predictive value of MAP3K8 in thyroid cancer progression.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

Evaluation of the efficacy of RUTI and ID93/GLA-SE vaccines in tuberculosis treatment: in silico trial through UISS-TB simulator.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

Exploiting Stochastic Petri Net formalism to capture the Relapsing Remitting Multiple Sclerosis variability under Daclizumab administration.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

Generation of digital patients for the simulation of tuberculosis with UISS-TB.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

A MapReduce tool for in-depth analysis of KEGG pathways: identification and visualization of therapeutic target candidates.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018
Continuous Petri Nets and microRNA Analysis in Melanoma.
IEEE/ACM Trans. Comput. Biology Bioinform., 2018

Combining Parallel Genetic Algorithms and Machine Learning to Improve the Research of Optimal Vaccination Protocols.
Proceedings of the 26th Euromicro International Conference on Parallel, 2018

BIOESOnet: A Tool for the Generation of Personalized Human Metabolic Pathways from 23andMe Exome Data.
Proceedings of the Intelligent Computing Theories and Application, 2018

GPU Accelerated Analysis of Treg-Teff Cross Regulation in Relapsing-Remitting Multiple Sclerosis.
Proceedings of the Euro-Par 2018: Parallel Processing Workshops, 2018

Efficient and Settings-Free Calibration of Detailed Kinetic Metabolic Models with Enzyme Isoforms Characterization.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2018

Estimating Daclizumab effects in Multiple Sclerosis using Stochastic Symmetric Nets.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Parallel Pair-Wise Interaction for Multi-Agent Immune Systems Modelling.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Agent based modeling of relapsing multiple sclerosis: a possible approach to predict treatment outcome.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

An agent based modeling approach for the analysis of tuberculosis - immune system dynamics.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017
Combining agent based-models and virtual screening techniques to predict the best citrus-derived vaccine adjuvants against human papilloma virus.
BMC Bioinformatics, 2017

Modeling PI3K/PDK1/Akt and MAPK Signaling Pathways Using Continuous Petri Nets.
Proceedings of the Intelligent Computing Theories and Application, 2017

2DIs: A SBML Compliant Web Platform for the Design and Modeling of Immune System Interactions.
Proceedings of the Intelligent Computing Theories and Application, 2017

Introducing scale factor adjustments on agent-based simulations of the immune system.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Optimization and analisys of vaccination schedules using simulated annealing and agent based models.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

A mathematical model to study breast cancer growth.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016
SHyFTA, a Stochastic Hybrid Fault Tree Automaton for the modelling and simulation of dynamic reliability problems.
Expert Syst. Appl., 2016

A methodological approach for using high-level Petri Nets to model the immune system response.
BMC Bioinformatics, 2016

A computational model to predict the immune system activation by citrus-derived vaccine adjuvants.
Bioinformatics, 2016

2015
Computational modeling of the expansion of human cord blood CD133+ hematopoietic stem/progenitor cells with different cytokine combinations.
Bioinformatics, 2015

2014
Induction of T-cell memory by a dendritic cell vaccine: a computational model.
Bioinformatics, 2014

OntoFast: Construct Ontology Rapidly.
Proceedings of the Knowledge Engineering and the Semantic Web, 2014

Relapsing-remitting multiple scleroris and the role of vitamin D: an agent based model.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013
Agent based modeling of Treg-Teff cross regulation in relapsing-remitting multiple sclerosis.
BMC Bioinformatics, 2013

iAtheroSim: atherosclerosis process simulator on smart devices.
Proceedings of the ACM Conference on Bioinformatics, 2013

2012
A Mathematical Model of Immune-System-Melanoma Competition.
Comp. Math. Methods in Medicine, 2012

Mathematical modeling of the immune system recognition to mammary carcinoma antigen.
BMC Bioinformatics, 2012

2011
Predicting Long-Term Vaccine Efficacy against Metastases Using Agents.
Proceedings of the Bio-Inspired Computing and Applications, 2011

2010
Modeling the competition between lung metastases and the immune system using agents.
BMC Bioinformatics, 2010

Cancer Immunoprevention: What Can We Learn from in Silico Models?
Proceedings of the Advanced Intelligent Computing Theories and Applications, 2010

GRIDUISS - A Grid Based Universal Immune System Simulator Framework.
Proceedings of the Advanced Intelligent Computing Theories and Applications, 2010

Universal immune system simulator framework (UISS).
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009
Simulated Annealing and Optimal Protocols.
Journal of Circuits, Systems, and Computers, 2009

ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization.
Briefings in Bioinformatics, 2009

Agent Based Modeling of Atherosclerosis: A Concrete Help in Personalized Treatments.
Proceedings of the Emerging Intelligent Computing Technology and Applications. With Aspects of Artificial Intelligence, 2009

Agent Based Modeling of Lung Metastasis-Immune System Competition.
Proceedings of the Artificial Immune Systems, 8th International Conference, 2009

HAMFAST: Fast Hamming Distance Computation.
Proceedings of the CSIE 2009, 2009 WRI World Congress on Computer Science and Information Engineering, March 31, 2009

The ImmunoGrid Simulator: How to Use It.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2009

2008
Optimal vaccination schedules using simulated annealing.
Bioinformatics, 2008

2007
Towards a Personalized Schedule with Triplex Vaccine.
Proceedings of the Applications of Fuzzy Sets Theory, 2007

A Genetic Algorithm for Shortest Path Motion Problem in Three Dimensions.
Proceedings of the Advanced Intelligent Computing Theories and Applications. With Aspects of Artificial Intelligence, 2007


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