Paola Paci

According to our database, Paola Paci authored at least 24 papers between 2008 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Overview of bioinformatic tools to study viral infections.

Verdiana Zulian, Anna Rosa Garbuglia, Giulia Fiscon, Paola Paci

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

A single-cell transcriptomic analysis of Neuroblastomas revealed a selective cGAS-STING pathway suppression in malignant cells.

Pasquale Sibilio, Stefano Di Giulio, Alessio Funari, Paola Paci, Veronica Veschi, Giuseppe Giannini

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

Network-based analysis to uncover drug-induced adverse side-effects.

Alessio Funari, Paola Paci, Federica Conte

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

A network-based bioinformatic analysis for identifying potential repurposable active molecules in different types of human cancers.

Martina Brunetti, Paola Paci, Giulia Fiscon

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022

A Transcriptome- and Interactome-Based Analysis Identifies Repurposable Drugs for Human Breast Cancer Subtypes.

Federica Conte, Pasquale Sibilio, Giulia Fiscon, Paola Paci

Symmetry, 2022

Mining sponge phenomena in RNA expression data.

Fabrizio Angiulli, Teresa Colombo, Fabio Fassetti, Angelo Furfaro, Paola Paci

J. Bioinform. Comput. Biol., 2022

SPINNAKER: an R-based tool to highlight key RNA interactions in complex biological networks.

Paola Paci, Giulia Fiscon

BMC Bioinform., 2022

StaRTrEK: in silico estimation of RNA half-lives from genome-wide time-course experiments without transcriptional inhibition.

Federica Conte, Federico Papa, Paola Paci, Lorenzo Farina

BMC Bioinform., 2022

SWIMmeR: an R-based software to unveiling crucial nodes in complex biological networks.

Paola Paci, Giulia Fiscon

Bioinform., 2022

2021

SAveRUNNER: A network-based algorithm for drug repurposing and its application to COVID-19.

Giulia Fiscon, Federica Conte, Lorenzo Farina, Paola Paci

PLoS Comput. Biol., 2021

Integro-differential approach for modeling the COVID-19 dynamics - Impact of confinement measures in Italy.

Francesco Salvadore, Giulia Fiscon, Paola Paci

Comput. Biol. Medicine, 2021

SEaCorAl: Identifying and contrasting the regulation-correlation bias in RNA-Seq paired expression data of patient groups.

Manuela Petti, Antonella Verrienti, Paola Paci, Lorenzo Farina

Comput. Biol. Medicine, 2021

Assessing the impact of data-driven limitations on tracing and forecasting the outbreak dynamics of COVID-19.

Giulia Fiscon, Francesco Salvadore, Valerio Guarrasi, Anna Rosa Garbuglia, Paola Paci

Comput. Biol. Medicine, 2021

SAveRUNNER: an R-based tool for drug repurposing.

Giulia Fiscon, Paola Paci

BMC Bioinform., 2021

2019

Network Inference and Reconstruction in Bioinformatics.

Paolo Tieri, Lorenzo Farina, Manuela Petti, Laura Astolfi, Paola Paci, Filippo Castiglione

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

MIENTURNET: an interactive web tool for microRNA-target enrichment and network-based analysis.

Valerio Licursi, Federica Conte, Giulia Fiscon, Paola Paci

BMC Bioinform., 2019

2014

Correction to Modules Identification in Protein Structures: The Topological and Geometrical Solutions.

Setareh Tasdighian, Luisa Di Paola, Micol De Ruvo, Paola Paci, Daniele Santoni, Pasquale Palumbo, Giampiero Mei, Almerinda Di Venere, Alessandro Giuliani

J. Chem. Inf. Model., 2014

Modules Identification in Protein Structures: The Topological and Geometrical Solutions.

Setareh Tasdighian, Luisa Di Paola, Micol De Ruvo, Paola Paci, Daniele Santoni, Pasquale Palumbo, Giampiero Mei, Almerinda Di Venere, Alessandro Giuliani

J. Chem. Inf. Model., 2014

Computational analysis identifies a sponge interaction network between long non-coding RNAs and messenger RNAs in human breast cancer.

Paola Paci, Teresa Colombo, Lorenzo Farina

BMC Syst. Biol., 2014

2012

Stochastic Modeling of Expression Kinetics Identifies Messenger Half-Lives and Reveals Sequential Waves of Co-ordinated Transcription and Decay.

Filippo Cacace, Paola Paci, Valerio Cusimano, Alfredo Germani, Lorenzo Farina

PLoS Comput. Biol., 2012

Proteins as Sponges: A Statistical Journey along Protein Structure Organization Principles.

Luisa Di Paola, Paola Paci, Daniele Santoni, Micol De Ruvo, Alessandro Giuliani

J. Chem. Inf. Model., 2012

2009

Modeling lymphocyte homing and encounters in lymph nodes.

Valentina Baldazzi, Paola Paci, Massimo Bernaschi, Filippo Castiglione

BMC Bioinform., 2009

ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization.

Francesco Pappalardo, Mark D. Halling-Brown, Nicolas Rapin, Ping Zhang, Davide Alemani, Andrew P. J. Emerson, Paola Paci, Patrice Duroux, Marzio Pennisi, Arianna Palladini, Olivo Miotto, Daniel Churchill, Elda Rossi, Adrian J. Shepherd, David S. Moss, Filippo Castiglione, Massimo Bernaschi, Marie-Paule Lefranc, Søren Brunak, Santo Motta, Pierluigi Lollini, Kaye E. Basford, Vladimir Brusic

Briefings Bioinform., 2009

2008

A Discrete/Continuous Model of Anti-HIV Response and Therapy.

Paola Paci, Filippo Castiglione, Massimo Bernaschi, Valentina Baldazzi

Proceedings of the 10th EUROS/UKSim International Conference on Computer Modelling and Simulation, 2008