Masanori Arita

Orcid: 0000-0001-6706-0487

According to our database1, Masanori Arita authored at least 41 papers between 1995 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Links

On csauthors.net:

Bibliography

2024
InChI isotopologue and isotopomer specifications.
J. Cheminformatics, December, 2024

2021
The international nucleotide sequence database collaboration.
Nucleic Acids Res., 2021

2020
Development of the portal site of COVID-19 data in Japan: poster abstract.
Proceedings of the SenSys '20: The 18th ACM Conference on Embedded Networked Sensor Systems, 2020

2019
Rearrangement analysis of multiple bacterial genomes.
BMC Bioinform., December, 2019

2018
Comparative analysis of probiotic bacteria based on a new definition of core genome.
J. Bioinform. Comput. Biol., 2018

2017
Computational Metabolomics (NII Shonan Meeting 2017-3).
NII Shonan Meet. Rep., 2017

Comprehensive identification of sphingolipid species by in silico retention time and tandem mass spectral library.
J. Cheminformatics, 2017

Visualization of consensus genome structure without using a reference genome.
BMC Genom., 2017

2016
PASMet: a web-based platform for prediction, modelling and analyses of metabolic systems.
Nucleic Acids Res., 2016

2014
MRMPROBS suite for metabolomics using large-scale MRM assays.
Bioinform., 2014

2012
DNA Memory.
Proceedings of the Handbook of Natural Computing, 2012

2011
Exploring molecular backgrounds of quality traits in rice by predictive models based on high-coverage metabolomics.
BMC Syst. Biol., 2011

Metabolomic correlation-network modules in Arabidopsis based on a graph-clustering approach.
BMC Syst. Biol., 2011

GC/MS Based Metabolomics: Development of a Data Mining System for Metabolite Identification by using Soft Independent Modeling of Class Analogy (SIMCA).
BMC Bioinform., 2011

Reconstructing phylogeny from metabolic substrate-product relationships.
BMC Bioinform., 2011

2010
Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis.
BMC Bioinform., 2010

2009
A pitfall of wiki solution for biological databases.
Briefings Bioinform., 2009

Traceable Analysis of Multiple-Stage Mass Spectra through Precursor-Product Annotations.
Proceedings of the German Conference on Bioinformatics 2009, 2009

Ontology Checking and Integration of Crude-Drug and Kampo Information.
Proceedings of the 2nd International Conference on BioMedical Engineering and Informatics, 2009

2008
Time-resolved metabolomics reveals metabolic modulation in rice foliage.
BMC Syst. Biol., 2008

Search extension transforms Wiki into a relational system: A case for flavonoid metabolite database.
BioData Min., 2008

Comparison of ESI-MS Spectra in MassBank Database.
Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics, 2008

2007
Comparison of Protein Complexes Predicted from PPI Networks by DPClus and Newman Clustering Algorithms.
Inf. Media Technol., 2007

Unbiased characterization of genotype-dependent metabolic regulations by metabolomic approach in Arabidopsis thaliana.
BMC Syst. Biol., 2007

Flow Model of the Protein-protein Interaction Network for Finding Credible Interactions.
Proceedings of 5th Asia-Pacific Bioinformatics Conference, 2007

2006
Automated classification of alternative splicing and transcriptional initiation and construction of visual database of classified patterns.
Bioinform., 2006

2005
Searching Similar Modules in Protein Interaction Netwo.
Proceedings of the 21st International Conference on Data Engineering Workshops, 2005

2004
Comma-free design for DNA words.
Commun. ACM, 2004

Writing Information into DNA.
Proceedings of the Aspects of Molecular Computing, 2004

2003
Dynamic modeling of genetic networks using genetic algorithm and S-system.
Bioinform., 2003

2002
DNA Sequence Design Using Templates.
New Gener. Comput., 2002

Modeling splicing sites with pairwise correlations.
Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002

On Template Method for DNA Sequence Design.
Proceedings of the DNA Computing, 8th International Workshop on DNA Based Computers, 2002

2000
Metabolic reconstruction using shortest paths.
Simul. Pract. Theory, 2000

Improving Sequence Design for DNA Computing.
Proceedings of the Genetic and Evolutionary Computation Conference (GECCO '00), 2000

Reconstructing Metabolic Pathways with New Enzyme Classification.
Proceedings of the German Conference on Bioinformatics (GCB 2000), 2000

Successive State Transitions with I/O Interface by Molecules.
Proceedings of the DNA Computing, 6th International Workshop on DNA-Based Computers, 2000

1997
Solid phase DNA solution to the Hamiltonian path problem.
Proceedings of the DNA Based Computers, 1997

Towards parallel evaluation and learning of Boolean μ-formulas with molecules.
Proceedings of the DNA Based Computers, 1997

Stepwise Generation of Hamiltonian Path with Molecules.
Proceedings of the Biocomputing and emergent computation: Proceedings of BCEC97, 1997

1995
Knowledge-Based Simulation of Regulatory Action in lambda phage.
Int. J. Artif. Intell. Tools, 1995


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