Philippe Rocca-Serra

Orcid: 0000-0001-9853-5668

Affiliations:
  • University of Oxford, UK


According to our database1, Philippe Rocca-Serra authored at least 46 papers between 2002 and 2022.

Collaborative distances:

Timeline

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Bibliography

2022
ELIXIR biovalidator for semantic validation of life science metadata.
Bioinform., 2022

2021
Barely sufficient practices in scientific computing.
Patterns, 2021

2020
Helping the Consumers and Producers of Standards, Repositories and Policies to Enable FAIR Data.
Data Intell., 2020

FAIR Principles: Interpretations and Implementation Considerations.
Data Intell., 2020

An Open Ecosystem for Pervasive Use of Persistent Identifiers.
Proceedings of the PEARC '20: Practice and Experience in Advanced Research Computing, 2020

2019
The FAIR Funder pilot programme to make it easy for funders to require and for grantees to produce FAIR Data.
CoRR, 2019

Interoperable and scalable data analysis with microservices: applications in metabolomics.
Bioinform., 2019

2018
Data discovery with DATS: exemplar adoptions and lessons learned.
J. Am. Medical Informatics Assoc., 2018

DataMed - an open source discovery index for finding biomedical datasets.
J. Am. Medical Informatics Assoc., 2018

2017
The future of metabolomics in ELIXIR.
F1000Research, 2017

mzML2ISA & nmrML2ISA: generating enriched ISA-Tab metadata files from metabolomics XML data.
Bioinform., 2017

2016
Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop.
J. Biomed. Semant., 2016

BioSharing: curated and crowd-sourced metadata standards, databases and data policies in the life sciences.
Database J. Biol. Databases Curation, 2016



2015
The center for expanded data annotation and retrieval.
J. Am. Medical Informatics Assoc., 2015

Special issue on bio-ontologies and phenotypes.
J. Biomed. Semant., 2015

Modeling a microbial community and biodiversity assay with OBO Foundry ontologies: the interoperability gains of a modular approach.
Database J. Biol. Databases Curation, 2015

COPO - Linked Open Infrastructure for Plant Data.
Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

2014
EBI metagenomics - a new resource for the analysis and archiving of metagenomic data.
Nucleic Acids Res., 2014

The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again.
BMC Bioinform., 2014

linkedISA: semantic representation of ISA-Tab experimental metadata.
BMC Bioinform., 2014

Selected papers from the 16th Annual Bio-Ontologies Special Interest Group Meeting.
J. Biomed. Semant., 2014

Redesigning the Sequence Logo with Glyph-based Approaches to Aid Interpretation.
Proceedings of the 16th Eurographics Conference on Visualization, 2014

Modeling a Microbial Community and Biodiversity Assay with OBI and PCO OBO Foundry Ontologies: the Interoperability Gains of a Modular Approach.
Proceedings of the 5th International Conference on Biomedical Ontology, 2014

2013
Visual Compression of Workflow Visualizations with Automated Detection of Macro Motifs.
IEEE Trans. Vis. Comput. Graph., 2013

MetaboLights - an open-access general-purpose repository for metabolomics studies and associated meta-data.
Nucleic Acids Res., 2013

OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets.
Bioinform., 2013

The MetaboLights repository: curation challenges in metabolomics.
Database J. Biol. Databases Curation, 2013

2012
Taxonomy-Based Glyph Design - with a Case Study on Visualizing Workflows of Biological Experiments.
IEEE Trans. Vis. Comput. Graph., 2012

The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons.
Nucleic Acids Res., 2012

Translating standards into practice - One Semantic Web API for Gene Expression.
J. Biomed. Informatics, 2012

graph2tab, a library to convert experimental workflow graphs into tabular formats.
Bioinform., 2012

2011
Towards BioDBcore: a community-defined information specification for biological databases.
Database J. Biol. Databases Curation, 2011

Overcoming the ontology enrichment bottleneck with Quick Term Templates.
Appl. Ontology, 2011

2010
Modeling biomedical experimental processes with OBI.
J. Biomed. Semant., 2010

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level.
Bioinform., 2010

2009
ArrayExpress update - from an archive of functional genomics experiments to the atlas of gene expression.
Nucleic Acids Res., 2009

Survey-based naming conventions for use in OBO Foundry ontology development.
BMC Bioinform., 2009

2006
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.
BMC Bioinform., 2006

The use of concept maps during knowledge elicitation in ontology development processes - the nutrigenomics use case.
BMC Bioinform., 2006

The MGED Ontology: a resource for semantics-based description of microarray experiments.
Bioinform., 2006

2005
ArrayExpress - a public repository for microarray gene expression data at the EBI.
Nucleic Acids Res., 2005

The ArrayExpress gene expression database: a software engineering and implementation perspective.
Bioinform., 2005

2003
ArrayExpress - a public repository for microarray gene expression data at the EBI.
Nucleic Acids Res., 2003

2002
An open letter to the scientific journals.
Bioinform., 2002


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