Matteo Ré

Orcid: 0000-0002-2907-2847

According to our database1, Matteo Ré authored at least 28 papers between 2007 and 2018.

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Bibliography

2018
A Graphical Tool for the Exploration and Visual Analysis of Biomolecular Networks.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2018

2016
<i>RANKS</i>: a flexible tool for node label ranking and classification in biological networks.
Bioinform., 2016

Within network learning on big graphs using secondary memory-based random walk kernels.
Proceedings of the Complex Networks & Their Applications V - Proceedings of the 5th International Workshop on Complex Networks and their Applications (COMPLEX NETWORKS 2016), Milan, Italy, November 30, 2016

2015
A Hierarchical Ensemble Method for DAG-Structured Taxonomies.
Proceedings of the Multiple Classifier Systems - 12th International Workshop, 2015

Prediction of Human Gene - Phenotype Associations by Exploiting the Hierarchical Structure of the Human Phenotype Ontology.
Proceedings of the Bioinformatics and Biomedical Engineering, 2015

2014
An extensive analysis of disease-gene associations using network integration and fast kernel-based gene prioritization methods.
Artif. Intell. Medicine, 2014

2013
Network-Based Drug Ranking and Repositioning with Respect to DrugBank Therapeutic Categories.
IEEE ACM Trans. Comput. Biol. Bioinform., 2013

A neural network algorithm for semi-supervised node label learning from unbalanced data.
Neural Networks, 2013

2012
A Fast Ranking Algorithm for Predicting Gene Functions in Biomolecular Networks.
IEEE ACM Trans. Comput. Biol. Bioinform., 2012

Synergy of multi-label hierarchical ensembles, data fusion, and cost-sensitive methods for gene functional inference.
Mach. Learn., 2012

Cancer module genes ranking using kernelized score functions.
BMC Bioinform., 2012

Large Scale Ranking and Repositioning of Drugs with Respect to DrugBank Therapeutic Categories.
Proceedings of the Bioinformatics Research and Applications - 8th International Symposium, 2012

Random Walking on Functional Interaction Networks to Rank Genes Involved in Cancer.
Proceedings of the Artificial Intelligence Applications and Innovations, 2012

2011
A Novel Ensemble Technique for Protein Subcellular Location Prediction.
Proceedings of the Ensembles in Machine Learning Applications, 2011

Comparing early and late data fusion methods for gene expression prediction.
Soft Comput., 2011

Identification of promoter regions in genomic sequences by 1-dimensional constraint clustering.
Proceedings of the Neural Nets WIRN11, 2011

2010
Simple ensemble methods are competitive with state-of-the-art data integration methods for gene function prediction.
Proceedings of the third International Workshop on Machine Learning in Systems Biology, 2010

Noise tolerance of Multiple Classifier Systems in data integration-based gene function prediction.
J. Integr. Bioinform., 2010

Integration of heterogeneous data sources for gene function prediction using decision templates and ensembles of learning machines.
Neurocomputing, 2010

An Experimental Comparison of Hierarchical Bayes and True Path Rule Ensembles for Protein Function Prediction.
Proceedings of the Multiple Classifier Systems, 9th International Workshop, 2010

2009
Prediction of Gene Function Using Ensembles of SVMs and Heterogeneous Data Sources.
Proceedings of the Applications of Supervised and Unsupervised Ensemble Methods, 2009

A stability-based algorithm to validate hierarchical clusters of genes.
Int. J. Knowl. Eng. Soft Data Paradigms, 2009

Accurate discrimination of conserved coding and non-coding regions through multiple indicators of evolutionary dynamics.
BMC Bioinform., 2009

Detecting conserved coding genomic regions through signal processing of nucleotide substitution patterns.
Artif. Intell. Medicine, 2009

Comparing early and late data fusion methods for gene function prediction.
Proceedings of the Neural Nets WIRN09, 2009

Ensemble Based Data Fusion for Gene Function Prediction.
Proceedings of the Multiple Classifier Systems, 8th International Workshop, 2009

2007
A high performance grid-web service framework for the identification of 'conserved sequence tags'.
Future Gener. Comput. Syst., 2007

Signal Processing in Comparative Genomics.
Proceedings of the Applications of Fuzzy Sets Theory, 2007


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