Graziano Pesole
Orcid: 0000-0003-3663-0859
According to our database1,
Graziano Pesole
authored at least 93 papers
between 1993 and 2023.
Collaborative distances:
Collaborative distances:
Timeline
Legend:
Book In proceedings Article PhD thesis Dataset OtherLinks
Online presence:
-
on zbmath.org
-
on orcid.org
-
on id.loc.gov
On csauthors.net:
Bibliography
2023
UTRdb 2.0: a comprehensive, expert curated catalog of eukaryotic mRNAs untranslated regions.
Nucleic Acids Res., January, 2023
2022
MetaCOXI: an integrated collection of metazoan mitochondrial cytochrome oxidase subunit-I DNA sequences.
Database J. Biol. Databases Curation, 2022
The Laniakea Dashboard and Storage Encryption Components: A Foundation for Developing On-Demand Cloud Services for Life Science.
Proceedings of the Current Trends in Web Engineering, 2022
2021
Bioinform., November, 2021
REDIportal: millions of novel A-to-I RNA editing events from thousands of RNAseq experiments.
Nucleic Acids Res., 2021
Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR.
F1000Research, 2021
Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service.
BMC Bioinform., 2021
Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities.
Briefings Bioinform., 2021
2020
BMC Bioinform., 2020
ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community.
BMC Bioinform., 2020
Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data.
Briefings Bioinform., 2020
2019
Briefings Bioinform., 2019
2018
ITSoneDB: a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences.
Nucleic Acids Res., 2018
2017
Nucleic Acids Res., 2017
MetaShot: an accurate workflow for taxon classification of host-associated microbiome from shotgun metagenomic data.
Bioinform., 2017
2015
BMC Bioinform., 2015
MSA-PAD: DNA multiple sequence alignment framework based on PFAM accessed domain information.
Bioinform., 2015
2014
EasyCluster2: an improved tool for clustering and assembling long transcriptome reads.
BMC Bioinform., 2014
MToolBox: a highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing.
Bioinform., 2014
ODESSA: A high performance analysis pipeline for Ultra Deep targeted Exome Sequencing data.
Proceedings of the International Conference on High Performance Computing & Simulation, 2014
2013
PscanChIP: finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments.
Nucleic Acids Res., 2013
Nucleic Acids Res., 2013
BMC Bioinform., 2013
Motif discovery and transcription factor binding sites before and after the next-generation sequencing era.
Briefings Bioinform., 2013
Proceedings of the Emerging Intelligent Computing Technology and Applications, 2013
2012
Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets.
Nucleic Acids Res., 2012
MitoZoa 2.0: a database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa.
Nucleic Acids Res., 2012
PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text.
BMC Bioinform., 2012
Briefings Bioinform., 2012
2011
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing.
Nucleic Acids Res., 2011
Bioinform., 2011
2010
UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.
Nucleic Acids Res., 2010
Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing.
Briefings Bioinform., 2010
Proceedings of the Advanced Intelligent Computing Theories and Applications, 2010
2009
Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes.
Nucleic Acids Res., 2009
J. Comput. Biol., 2009
Accurate discrimination of conserved coding and non-coding regions through multiple indicators of evolutionary dynamics.
BMC Bioinform., 2009
EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data.
BMC Bioinform., 2009
Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements.
BMC Bioinform., 2009
2008
Bioinformatics in Italy: BITS2007, the fourth annual meeting of the Italian Society of Bioinformatics.
BMC Bioinform., 2008
Correlated substitution analysis and the prediction of amino acid structural contacts.
Briefings Bioinform., 2008
HT-RLS: High-Throughput Web Tool for Analysis of DNA Microarray Data Using RLS classifiers.
Proceedings of the 8th IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2008), 2008
GenePC and ASPIC Integrate Gene Predictions with Expressed Sequence Alignments To Predict Alternative Transcripts.
Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 2008
2007
A high performance grid-web service framework for the identification of 'conserved sequence tags'.
Future Gener. Comput. Syst., 2007
p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining <i>in silico </i>prediction and microarray data.
BMC Bioinform., 2007
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences.
BMC Bioinform., 2007
Bioinformatics in Italy: BITS2006, the third annual meeting of the Italian Society of Bioinformatics.
BMC Bioinform., 2007
Statistical assessment of functional categories of genes deregulated in pathological conditions by using microarray data.
Bioinform., 2007
Artif. Intell. Medicine, 2007
2006
MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes.
Nucleic Acids Res., 2006
ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization.
Nucleic Acids Res., 2006
BMC Bioinform., 2006
GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.
Bioinform., 2006
Proceedings of the International Joint Conference on Neural Networks, 2006
2005
UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.
Nucleic Acids Res., 2005
DG-CST (Disease Gene Conserved Sequence Tags), a database of human-mouse conserved elements associated to disease genes.
Nucleic Acids Res., 2005
Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society.
BMC Bioinform., 2005
ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences.
BMC Bioinform., 2005
BMC Bioinform., 2005
SVM and RLS Models for Cancer Classification.
Proceedings of the IASTED International Conference on Computational Intelligence, 2005
2004
Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes.
Nucleic Acids Res., 2004
CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison.
Nucleic Acids Res., 2004
An Algorithm for Finding Conserved Secondary Structure Motifs in Unaligned RNA Sequences.
J. Comput. Sci. Technol., 2004
WebVar: a resource for the rapid estimation of relative site variability from multiple sequence alignments.
Bioinform., 2004
DNAfan: a software tool for automated extraction and analysis of user-defined sequence regions.
Bioinform., 2004
Briefings Bioinform., 2004
2003
PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences.
Nucleic Acids Res., 2003
The estimation of relative site variability among aligned homologous protein sequences.
Bioinform., 2003
A Method to Detect Gene Structure and Alternative Splice Sites by Agreeing ESTs to a Genomic Sequence.
Proceedings of the Algorithms in Bioinformatics, Third International Workshop, 2003
Proceedings of the 15th IEEE International Conference on Tools with Artificial Intelligence (ICTAI 2003), 2003
Wiley, ISBN: 978-0-471-39128-9, 2003
2002
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002.
Nucleic Acids Res., 2002
Nucleic Acids Res., 2002
Evolutionary Dynamics of Mammalian MRNA Untranslated Regions by Comparative Analysis of Orthologous Human, Artiodactyl and Rodent Gene Pairs.
Comput. Chem., 2002
2001
Methods for Pattern Discovery in Unaligned Biological Sequences.
Briefings Bioinform., 2001
An algorithm for finding signals of unknown length in DNA sequences.
Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001
2000
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs.
Nucleic Acids Res., 2000
MitoNuc and MitoAln: two related databases of nuclear genes coding for mitochondrial proteins.
Nucleic Acids Res., 2000
PatSearch: a pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance.
Bioinform., 2000
The Untranslated Regions of Eukaryotic MRNAs: Structure, Function, Evolution and Bioinformatic Tools for Their Analysis.
Briefings Bioinform., 2000
1999
Nucleic Acids Res., 1999
1998
UTRdb: a specialized database of 5'- and 3'-untranslated regions of eukaryotic mRNAs.
Nucleic Acids Res., 1998
1996
CLEANUP: a fast computer program for removing redundancies from nucleotide sequence databases.
Comput. Appl. Biosci., 1996
1993
Comput. Appl. Biosci., 1993
SIMD parallelization of the WORDUP algorithm for detecting statistically significant patterns in DNA sequences.
Comput. Appl. Biosci., 1993