Sebastian Köhler

Orcid: 0000-0002-5316-1399

Affiliations:
  • Charité - University Medicine Berlin, Germany


According to our database1, Sebastian Köhler authored at least 25 papers between 2009 and 2022.

Collaborative distances:

Timeline

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Bibliography

2022
A Simple Standard for Sharing Ontological Mappings (SSSOM).
Database J. Biol. Databases Curation, 2022

2021
The Human Phenotype Ontology in 2021.
Nucleic Acids Res., 2021

2020
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species.
Nucleic Acids Res., 2020

2019
Semantic integration of clinical laboratory tests from electronic health records for deep phenotyping and biomarker discovery.
npj Digit. Medicine, 2019

RegulationSpotter: annotation and interpretation of extratranscriptic DNA variants.
Nucleic Acids Res., 2019

Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources.
Nucleic Acids Res., 2019

Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery.
Database J. Biol. Databases Curation, 2019

2018
An ontology-based method for assessing batch effect adjustment approaches in heterogeneous datasets.
Bioinform., 2018

Improved ontology-based similarity calculations using a study-wise annotation model.
Database J. Biol. Databases Curation, 2018

2017
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species.
Nucleic Acids Res., 2017

The Human Phenotype Ontology in 2017.
Nucleic Acids Res., 2017

Aligning the Human Phenotype and Mammalian Phenotype Ontology using Dead Simple Ontology Design Patterns.
Proceedings of the 8th International Conference on Biomedical Ontology (ICBO 2017), Newcastle-upon-Tyne, United Kingdom, September 13th, 2017

2016
Enhancing the Human Phenotype Ontology for Use by the Layperson.
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

2015
Automatic concept recognition using the Human Phenotype Ontology reference and test suite corpora.
Database J. Biol. Databases Curation, 2015

A Hierarchical Ensemble Method for DAG-Structured Taxonomies.
Proceedings of the Multiple Classifier Systems - 12th International Workshop, 2015

Prediction of Human Gene - Phenotype Associations by Exploiting the Hierarchical Structure of the Human Phenotype Ontology.
Proceedings of the Bioinformatics and Biomedical Engineering, 2015

2014
The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data.
Nucleic Acids Res., 2014

The influence of disease categories on gene candidate predictions from model organism phenotypes.
J. Biomed. Semant., 2014

Walking the interactome for candidate prioritization in exome sequencing studies of Mendelian diseases.
Bioinform., 2014

2013
Phenotype informatics (Network approaches towards understanding the diseasome) (Phänotyp-Informatik) (Netzwerk-Ansätze zur Analyse genetisch beeinflusster Erkrankungen)
PhD thesis, 2013

PhenoDigm: analyzing curated annotations to associate animal models with human diseases.
Database J. Biol. Databases Curation, 2013

2012
Bayesian ontology querying for accurate and noise-tolerant semantic searches.
Bioinform., 2012

2011
Exact score distribution computation for ontological similarity searches.
BMC Bioinform., 2011

Improving ontologies by automatic reasoning and evaluation of logical definitions.
BMC Bioinform., 2011

2009
Exact Score Distribution Computation for Similarity Searches in Ontologies.
Proceedings of the Algorithms in Bioinformatics, 9th International Workshop, 2009


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