Matthew J. Thompson

According to our database, Matthew J. Thompson authored at least 18 papers between 2021 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

BioCAP: Exploiting Synthetic Captions Beyond Labels in Biological Foundation Models.

Ziheng Zhang, Xinyue Ma, Arpita Chowdhury, Elizabeth G. Campolongo, Matthew J. Thompson, Net Zhang, Samuel Stevens, Hilmar Lapp, Tanya Y. Berger-Wolf, Yu Su, Wei-Lun Chao, Jianyang Gu

CoRR, October, 2025

kabr-tools: Automated Framework for Multi-Species Behavioral Monitoring.

Jenna Kline, Maksim Kholiavchenko, Samuel Stevens, Nina Van Tiel, Alison Zhong, Namrata Banerji, Alec Sheets, Sowbaranika Balasubramaniam, Isla Duporge, Matthew J. Thompson, Elizabeth G. Campolongo, Jackson Miliko, Neil Rosser, Tanya Y. Berger-Wolf, Charles V. Stewart, Daniel I. Rubenstein

CoRR, October, 2025

Deep dive into KABR: a dataset for understanding ungulate behavior from in-situ drone video.

Maksim Kholiavchenko, Jenna Kline, Maksim Kukushkin, Otto Brookes, Sam Stevens, Isla Duporge, Alec Sheets, Reshma Ramesh Babu, Namrata Banerji, Elizabeth G. Campolongo, Matthew J. Thompson, Nina Van Tiel, Jackson Miliko, Eduardo Bessa, Majid Mirmehdi, Thomas Schmid, Tanya Y. Berger-Wolf, Daniel I. Rubenstein, Tilo Burghardt, Charles V. Stewart

Multim. Tools Appl., June, 2025

BioCLIP 2: Emergent Properties from Scaling Hierarchical Contrastive Learning.

Jianyang Gu, Samuel Stevens, Elizabeth G. Campolongo, Matthew J. Thompson, Net Zhang, Jiaman Wu, Andrei Kopanev, Zheda Mai, Alexander E. White, James P. Balhoff, Wasila M. Dahdul, Daniel I. Rubenstein, Hilmar Lapp, Tanya Y. Berger-Wolf, Wei-Lun Chao, Yu Su

CoRR, May, 2025

Optimizing Image Capture for Computer Vision-Powered Taxonomic Identification and Trait Recognition of Biodiversity Specimens.

Alyson East, Elizabeth G. Campolongo, Luke Meyers, S. M. Rayeed, Samuel Stevens, Iuliia Zarubiieva, Isadora E. Fluck, Jennifer C. Girón, Maximiliane Jousse, Scott C. Lowe, Kayla I Perry, Isabelle Betancourt, Noah Charney, Evan Donoso, Nathan Fox, Kim J. Landsbergen, Ekaterina Nepovinnykh, Michelle Ramirez, Parkash Singh, Khum Thapa-Magar, Matthew J. Thompson, Evan Waite, Tanya Y. Berger-Wolf, Hilmar Lapp, Paula M. Mabee, Graham Taylor, Sydne Record

CoRR, May, 2025

Static Segmentation by Tracking: A Frustratingly Label-Efficient Approach to Fine-Grained Segmentation.

Zhenyang Feng, Zihe Wang, Saul Ibaven Bueno, Tomasz Frelek, Advikaa Ramesh, Jingyan Bai, Lemeng Wang, Zanming Huang, Jianyang Gu, Jinsu Yoo, Tai-Yu Pan, Arpita Chowdhury, Michelle Ramirez, Elizabeth G. Campolongo, Matthew J. Thompson, Christopher G. Lawrence, Sydne Record, Neil Rosser, Anuj Karpatne, Daniel I. Rubenstein, Hilmar Lapp, Charles V. Stewart, Tanya Y. Berger-Wolf, Yu Su, Wei-Lun Chao

CoRR, January, 2025

What Do You See in Common? Learning Hierarchical Prototypes over Tree-of-Life to Discover Evolutionary Traits.

Harish Babu Manogaran, M. Maruf, Arka Daw, Kazi Sajeed Mehrab, Caleb Patrick Charpentier, Josef C. Uyeda, Wasila M. Dahdul, Matthew J. Thompson, Elizabeth G. Campolongo, Kaiya L. Provost, Wei-Lun Chao, Tanya Y. Berger-Wolf, Paula M. Mabee, Hilmar Lapp, Anuj Karpatne

Proceedings of the Thirteenth International Conference on Learning Representations, 2025

Fish-Vista: A Multi-Purpose Dataset for Understanding & Identification of Traits from Images.

Kazi Sajeed Mehrab, M. Maruf, Arka Daw, Abhilash Neog, Harish Babu Manogaran, Mridul Khurana, Zhenyang Feng, Bahadir Altintas, Yasin Bakis, Elizabeth G. Campolongo, Matthew J. Thompson, Xiaojun Wang, Hilmar Lapp, Tanya Y. Berger-Wolf, Paula M. Mabee, Henry L. Bart Jr., Wei-Lun Chao, Wasila M. Dahdul, Anuj Karpatne

Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2025

2024

An Ultralow-Power Triaxial MEMS Accelerometer With High-Voltage Biasing and Electrostatic Mismatch Compensation.

Yimai Peng, Seokhyeon Jeong, Kyojin Choo, Yejoong Kim, Li-Yu Chen, Rohit Rothe, Li Xu, Ilya Gurin, Omid Oliaei, Matthew J. Thompson, Stephen Bart, Peter Hartwell, David T. Blaauw, Dennis Sylvester

IEEE J. Solid State Circuits, July, 2024

What Do You See in Common? Learning Hierarchical Prototypes over Tree-of-Life to Discover Evolutionary Traits.

Harish Babu Manogaran, M. Maruf, Arka Daw, Kazi Sajeed Mehrab, Caleb Charpentier, Josef C. Uyeda, Wasila M. Dahdul, Matthew J. Thompson, Elizabeth G. Campolongo, Kaiya Provost, Paula M. Mabee, Hilmar Lapp, Anuj Karpatne

CoRR, 2024

Fish-Vista: A Multi-Purpose Dataset for Understanding & Identification of Traits from Images.

Kazi Sajeed Mehrab, M. Maruf, Arka Daw, Harish Babu Manogaran, Abhilash Neog, Mridul Khurana, Bahadir Altintas, Yasin Bakis, Elizabeth G. Campolongo, Matthew J. Thompson, Xiaojun Wang, Hilmar Lapp, Wei-Lun Chao, Paula M. Mabee, Henry L. Bart Jr., Wasila M. Dahdul, Anuj Karpatne

CoRR, 2024

KABR: In-Situ Dataset for Kenyan Animal Behavior Recognition from Drone Videos.

Maksim Kholiavchenko, Jenna Kline, Michelle Ramirez, Sam Stevens, Alec Sheets, Reshma Ramesh Babu, Namrata Banerji, Elizabeth G. Campolongo, Matthew J. Thompson, Nina Van Tiel, Jackson Miliko, Eduardo Bessa, Isla Duporge, Tanya Y. Berger-Wolf, Daniel I. Rubenstein, Charles V. Stewart

Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision Workshops, 2024

VLM4Bio: A Benchmark Dataset to Evaluate Pretrained Vision-Language Models for Trait Discovery from Biological Images.

M. Maruf, Arka Daw, Kazi Sajeed Mehrab, Harish Babu Manogaran, Abhilash Neog, Medha Sawhney, Mridul Khurana, James P. Balhoff, Yasin Bakis, Bahadir Altintas, Matthew J. Thompson, Elizabeth G. Campolongo, Josef C. Uyeda, Hilmar Lapp, Henry L. Bart Jr., Paula M. Mabee, Yu Su, Wei-Lun Chao, Charles V. Stewart, Tanya Y. Berger-Wolf, Wasila M. Dahdul, Anuj Karpatne

Proceedings of the Advances in Neural Information Processing Systems 38: Annual Conference on Neural Information Processing Systems 2024, 2024

BioCLIP: A Vision Foundation Model for the Tree of Life.

Samuel Stevens, Jiaman Wu, Matthew J. Thompson, Elizabeth G. Campolongo, Chan Hee Song, David Edward Carlyn, Li Dong, Wasila M. Dahdul, Charles V. Stewart, Tanya Y. Berger-Wolf, Wei-Lun Chao, Yu Su

Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2024

2023

GlucoScreen: A Smartphone-based Readerless Glucose Test Strip for Prediabetes Screening.

Anandghan Waghmare, Farshid Salemi Parizi, Jason S. Hoffman, Yuntao Wang, Matthew J. Thompson, Shwetak N. Patel

Proc. ACM Interact. Mob. Wearable Ubiquitous Technol., March, 2023

A Framework for Autonomic Computing for In Situ Imageomics.

Jenna Kline, Christopher Stewart, Tanya Y. Berger-Wolf, Michelle Ramirez, Samuel Stevens, Reshma Ramesh Babu, Namrata Banerji, Alec Sheets, Sowbaranika Balasubramaniam, Elizabeth G. Campolongo, Matthew J. Thompson, Charles V. Stewart, Maksim Kholiavchenko, Daniel I. Rubenstein, Nina Van Tiel, Jackson Miliko

Proceedings of the IEEE International Conference on Autonomic Computing and Self-Organizing Systems, 2023

2022

Smartphone camera oximetry in an induced hypoxemia study.

Jason S. Hoffman, Varun K. Viswanath, Caiwei Tian, Xinyi Ding, Matthew J. Thompson, Eric C. Larson, Shwetak N. Patel, Edward Jay Wang

npj Digit. Medicine, 2022

2021

Smartphone Camera Oximetry in an Induced Hypoxemia Study.

Jason S. Hoffman, Varun K. Viswanath, Xinyi Ding, Matthew J. Thompson, Eric C. Larson, Shwetak N. Patel, Edward Jay Wang

CoRR, 2021