Minkai Xu

According to our database, Minkai Xu authored at least 56 papers between 2020 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2025

CHORDS: Diffusion Sampling Accelerator with Multi-core Hierarchical ODE Solvers.

Jiaqi Han, Haotian Ye, Puheng Li, Minkai Xu, James Zou, Stefano Ermon

CoRR, July, 2025

Inference-Time Scaling of Diffusion Language Models with Particle Gibbs Sampling.

Meihua Dang, Jiaqi Han, Minkai Xu, Kai Xu, Akash Srivastava, Stefano Ermon

CoRR, July, 2025

Divergence Minimization Preference Optimization for Diffusion Model Alignment.

Binxu Li, Minkai Xu, Meihua Dang, Stefano Ermon

CoRR, July, 2025

Discrete Diffusion Trajectory Alignment via Stepwise Decomposition.

Jiaqi Han, Austin Wang, Minkai Xu, Wenda Chu, Meihua Dang, Yisong Yue, Stefano Ermon

CoRR, July, 2025

Spatio-Temporal Energy-Guided Diffusion Model for Zero-Shot Video Synthesis and Editing.

Ling Yang, Yikai Zhao, Zhaochen Yu, Bohan Zeng, Minkai Xu, Shenda Hong, Bin Cui

IEEE Trans. Circuits Syst. Video Technol., June, 2025

RelDiff: Relational Data Generative Modeling with Graph-Based Diffusion Models.

Valter Hudovernik, Minkai Xu, Juntong Shi, Lovro Subelj, Stefano Ermon, Erik Strumbelj, Jure Leskovec

CoRR, June, 2025

Artificial Intelligence for Science in Quantum, Atomistic, and Continuum Systems.

Xuan Zhang, Limei Wang, Jacob Helwig, Youzhi Luo, Cong Fu, Yaochen Xie, Meng Liu, Yuchao Lin, Zhao Xu, Keqiang Yan, Keir Adams, Maurice Weiler, Xiner Li, Tianfan Fu, Yucheng Wang, Alex Strasser, Haiyang Yu, Yuqing Xie, Xiang Fu, Shenglong Xu, Yi Liu, Yuanqi Du, Alexandra Saxton, Hongyi Ling, Hannah Lawrence, Hannes Stärk, Shurui Gui, Carl Edwards, Nicholas Gao, Adriana Ladera, Tailin Wu, Elyssa F. Hofgard, Aria Mansouri Tehrani, Rui Wang, Ameya Daigavane, Montgomery Bohde, Jerry Kurtin, Qian Huang, Tuong Phung, Minkai Xu, Chaitanya K. Joshi, Simon V. Mathis, Kamyar Azizzadenesheli, Ada Fang, Alán Aspuru-Guzik, Erik J. Bekkers, Michael M. Bronstein, Marinka Zitnik, Anima Anandkumar, Stefano Ermon, Pietro Liò, Rose Yu, Stephan Günnemann, Jure Leskovec, Heng Ji, Jimeng Sun, Regina Barzilay, Tommi S. Jaakkola, Connor W. Coley, Xiaoning Qian, Xiaofeng Qian, Tess E. Smidt, Shuiwang Ji

Found. Trends Mach. Learn., 2025

Energy-Based Diffusion Language Models for Text Generation.

Minkai Xu, Tomas Geffner, Karsten Kreis, Weili Nie, Yilun Xu, Jure Leskovec, Stefano Ermon, Arash Vahdat

Proceedings of the Thirteenth International Conference on Learning Representations, 2025

TabDiff: a Mixed-type Diffusion Model for Tabular Data Generation.

Juntong Shi, Minkai Xu, Harper Hua, Hengrui Zhang, Stefano Ermon, Jure Leskovec

Proceedings of the Thirteenth International Conference on Learning Representations, 2025

SuperCorrect: Advancing Small LLM Reasoning with Thought Template Distillation and Self-Correction.

Ling Yang, Zhaochen Yu, Tianjun Zhang, Minkai Xu, Joseph E. Gonzalez, Bin Cui, Shuicheng Yan

Proceedings of the Thirteenth International Conference on Learning Representations, 2025

RetroDiff: Retrosynthesis as Multi-stage Distribution Interpolation.

Yiming Wang, Yuxuan Song, Yiqun Wang, Minkai Xu, Rui Wang, Hao Zhou, Wei-Ying Ma

Proceedings of the International Conference on Artificial Intelligence and Statistics, 2025

f-PO: Generalizing Preference Optimization with f-divergence Minimization.

Jiaqi Han, Mingjian Jiang, Yuxuan Song, Stefano Ermon, Minkai Xu

Proceedings of the International Conference on Artificial Intelligence and Statistics, 2025

2024

3D Interaction Geometric Pre-training for Molecular Relational Learning.

Namkyeong Lee, Yunhak Oh, Heewoong Noh, Gyoung S. Na, Minkai Xu, Hanchen Wang, Tianfan Fu, Chanyoung Park

CoRR, 2024

<i>f</i>-PO: Generalizing Preference Optimization with <i>f</i>-divergence Minimization.

Jiaqi Han, Mingjian Jiang, Yuxuan Song, Jure Leskovec, Stefano Ermon, Minkai Xu

CoRR, 2024

TabDiff: a Multi-Modal Diffusion Model for Tabular Data Generation.

Juntong Shi, Minkai Xu, Harper Hua, Hengrui Zhang, Stefano Ermon, Jure Leskovec

CoRR, 2024

SuperCorrect: Supervising and Correcting Language Models with Error-Driven Insights.

Ling Yang, Zhaochen Yu, Tianjun Zhang, Minkai Xu, Joseph E. Gonzalez, Bin Cui, Shuicheng Yan

CoRR, 2024

Trans4D: Realistic Geometry-Aware Transition for Compositional Text-to-4D Synthesis.

Bohan Zeng, Ling Yang, Siyu Li, Jiaming Liu, Zixiang Zhang, Juanxi Tian, Kaixin Zhu, Yongzhen Guo, Fu-Yun Wang, Minkai Xu, Stefano Ermon, Wentao Zhang

CoRR, 2024

The Heterophilic Graph Learning Handbook: Benchmarks, Models, Theoretical Analysis, Applications and Challenges.

Sitao Luan, Chenqing Hua, Qincheng Lu, Liheng Ma, Lirong Wu, Xinyu Wang, Minkai Xu, Xiao-Wen Chang, Doina Precup, Rex Ying, Stan Z. Li, Jian Tang, Guy Wolf, Stefanie Jegelka

CoRR, 2024

Consistency Flow Matching: Defining Straight Flows with Velocity Consistency.

Ling Yang, Zixiang Zhang, Zhilong Zhang, Xingchao Liu, Minkai Xu, Wentao Zhang, Chenlin Meng, Stefano Ermon, Bin Cui

CoRR, 2024

RealCompo: Dynamic Equilibrium between Realism and Compositionality Improves Text-to-Image Diffusion Models.

Xinchen Zhang, Ling Yang, Yaqi Cai, Zhaochen Yu, Jiake Xie, Ye Tian, Minkai Xu, Yong Tang, Yujiu Yang, Bin Cui

CoRR, 2024

MADiff: Offline Multi-agent Learning with Diffusion Models.

Zhengbang Zhu, Minghuan Liu, Liyuan Mao, Bingyi Kang, Minkai Xu, Yong Yu, Stefano Ermon, Weinan Zhang

Proceedings of the Advances in Neural Information Processing Systems 38: Annual Conference on Neural Information Processing Systems 2024, 2024

RealCompo: Balancing Realism and Compositionality Improves Text-to-Image Diffusion Models.

Xinchen Zhang, Ling Yang, Yaqi Cai, Zhaochen Yu, Kai-Ni Wang, Jiake Xie, Ye Tian, Minkai Xu, Yong Tang, Yujiu Yang, Bin Cui

Proceedings of the Advances in Neural Information Processing Systems 38: Annual Conference on Neural Information Processing Systems 2024, 2024

TFG: Unified Training-Free Guidance for Diffusion Models.

Haotian Ye, Haowei Lin, Jiaqi Han, Minkai Xu, Sheng Liu, Yitao Liang, Jianzhu Ma, James Y. Zou, Stefano Ermon

Proceedings of the Advances in Neural Information Processing Systems 38: Annual Conference on Neural Information Processing Systems 2024, 2024

Buffer of Thoughts: Thought-Augmented Reasoning with Large Language Models.

Ling Yang, Zhaochen Yu, Tianjun Zhang, Shiyi Cao, Minkai Xu, Wentao Zhang, Joseph E. Gonzalez, Bin Cui

Proceedings of the Advances in Neural Information Processing Systems 38: Annual Conference on Neural Information Processing Systems 2024, 2024

Geometric Trajectory Diffusion Models.

Jiaqi Han, Minkai Xu, Aaron Lou, Haotian Ye, Stefano Ermon

Proceedings of the Advances in Neural Information Processing Systems 38: Annual Conference on Neural Information Processing Systems 2024, 2024

Aligning Target-Aware Molecule Diffusion Models with Exact Energy Optimization.

Siyi Gu, Minkai Xu, Alexander S. Powers, Weili Nie, Tomas Geffner, Karsten Kreis, Jure Leskovec, Arash Vahdat, Stefano Ermon

Proceedings of the Advances in Neural Information Processing Systems 38: Annual Conference on Neural Information Processing Systems 2024, 2024

Equivariant Graph Neural Operator for Modeling 3D Dynamics.

Minkai Xu, Jiaqi Han, Aaron Lou, Jean Kossaifi, Arvind Ramanathan, Kamyar Azizzadenesheli, Jure Leskovec, Stefano Ermon, Anima Anandkumar

Proceedings of the Forty-first International Conference on Machine Learning, 2024

Mastering Text-to-Image Diffusion: Recaptioning, Planning, and Generating with Multimodal LLMs.

Ling Yang, Zhaochen Yu, Chenlin Meng, Minkai Xu, Stefano Ermon, Bin Cui

Proceedings of the Forty-first International Conference on Machine Learning, 2024

Cross-Modal Contextualized Diffusion Models for Text-Guided Visual Generation and Editing.

Ling Yang, Zhilong Zhang, Zhaochen Yu, Jingwei Liu, Minkai Xu, Stefano Ermon, Bin Cui

Proceedings of the Twelfth International Conference on Learning Representations, 2024

VQGraph: Rethinking Graph Representation Space for Bridging GNNs and MLPs.

Ling Yang, Ye Tian, Minkai Xu, Zhongyi Liu, Shenda Hong, Wei Qu, Wentao Zhang, Bin Cui, Muhan Zhang, Jure Leskovec

Proceedings of the Twelfth International Conference on Learning Representations, 2024

2023

Equivariant Flow Matching with Hybrid Probability Transport.

Yuxuan Song, Jingjing Gong, Minkai Xu, Ziyao Cao, Yanyan Lan, Stefano Ermon, Hao Zhou, Wei-Ying Ma

CoRR, 2023

RetroDiff: Retrosynthesis as Multi-stage Distribution Interpolation.

Yiming Wang, Yuxuan Song, Minkai Xu, Rui Wang, Hao Zhou, Weiying Ma

CoRR, 2023

Scaling Riemannian Diffusion Models.

Aaron Lou, Minkai Xu, Stefano Ermon

CoRR, 2023

VQGraph: Graph Vector-Quantization for Bridging GNNs and MLPs.

Ling Yang, Ye Tian, Minkai Xu, Zhongyi Liu, Shenda Hong, Wei Qu, Wentao Zhang, Bin Cui, Muhan Zhang, Jure Leskovec

CoRR, 2023

Equivariant Flow Matching with Hybrid Probability Transport for 3D Molecule Generation.

Yuxuan Song, Jingjing Gong, Minkai Xu, Ziyao Cao, Yanyan Lan, Stefano Ermon, Hao Zhou, Wei-Ying Ma

Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

When Do Graph Neural Networks Help with Node Classification? Investigating the Homophily Principle on Node Distinguishability.

Sitao Luan, Chenqing Hua, Minkai Xu, Qincheng Lu, Jiaqi Zhu, Xiao-Wen Chang, Jie Fu, Jure Leskovec, Doina Precup

Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

Scaling Riemannian Diffusion Models.

Aaron Lou, Minkai Xu, Adam Farris, Stefano Ermon

Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

MUDiff: Unified Diffusion for Complete Molecule Generation.

Chenqing Hua, Sitao Luan, Minkai Xu, Zhitao Ying, Jie Fu, Stefano Ermon, Doina Precup

Proceedings of the Learning on Graphs Conference, 27-30 November 2023, Virtual Event., 2023

Graph and Geometry Generative Modeling for Drug Discovery.

Minkai Xu, Meng Liu, Wengong Jin, Shuiwang Ji, Jure Leskovec, Stefano Ermon

Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, 2023

Geometric Latent Diffusion Models for 3D Molecule Generation.

Minkai Xu, Alexander S. Powers, Ron O. Dror, Stefano Ermon, Jure Leskovec

Proceedings of the International Conference on Machine Learning, 2023

Coarse-to-Fine: a Hierarchical Diffusion Model for Molecule Generation in 3D.

Bo Qiang, Yuxuan Song, Minkai Xu, Jingjing Gong, Bowen Gao, Hao Zhou, Wei-Ying Ma, Yanyan Lan

Proceedings of the International Conference on Machine Learning, 2023

FusionRetro: Molecule Representation Fusion via In-Context Learning for Retrosynthetic Planning.

Songtao Liu, Zhengkai Tu, Minkai Xu, Zuobai Zhang, Lu Lin, Rex Ying, Jian Tang, Peilin Zhao, Dinghao Wu

Proceedings of the International Conference on Machine Learning, 2023

2022

Generative Coarse-Graining of Molecular Conformations.

Wujie Wang, Minkai Xu, Chen Cai, Benjamin Kurt Miller, Tess E. Smidt, Yusu Wang, Jian Tang, Rafael Gómez-Bombarelli

Proceedings of the International Conference on Machine Learning, 2022

GeoDiff: A Geometric Diffusion Model for Molecular Conformation Generation.

Minkai Xu, Lantao Yu, Yang Song, Chence Shi, Stefano Ermon, Jian Tang

Proceedings of the Tenth International Conference on Learning Representations, 2022

2021

Predicting Molecular Conformation via Dynamic Graph Score Matching.

Shitong Luo, Chence Shi, Minkai Xu, Jian Tang

Proceedings of the Advances in Neural Information Processing Systems 34: Annual Conference on Neural Information Processing Systems 2021, 2021

An End-to-End Framework for Molecular Conformation Generation via Bilevel Programming.

Minkai Xu, Wujie Wang, Shitong Luo, Chence Shi, Yoshua Bengio, Rafael Gómez-Bombarelli, Jian Tang

Proceedings of the 38th International Conference on Machine Learning, 2021

Learning Gradient Fields for Molecular Conformation Generation.

Chence Shi, Shitong Luo, Minkai Xu, Jian Tang

Proceedings of the 38th International Conference on Machine Learning, 2021

Learning Neural Generative Dynamics for Molecular Conformation Generation.

Minkai Xu, Shitong Luo, Yoshua Bengio, Jian Peng, Jian Tang

Proceedings of the 9th International Conference on Learning Representations, 2021

Energy-Based Imitation Learning.

Minghuan Liu, Tairan He, Minkai Xu, Weinan Zhang

Proceedings of the AAMAS '21: 20th International Conference on Autonomous Agents and Multiagent Systems, 2021

Towards Generalized Implementation of Wasserstein Distance in GANs.

Minkai Xu

Proceedings of the Thirty-Fifth AAAI Conference on Artificial Intelligence, 2021

2020

Sobolev Wasserstein GAN.

Minkai Xu, Zhiming Zhou, Guansong Lu, Jian Tang, Weinan Zhang, Yong Yu

CoRR, 2020

Reciprocal Supervised Learning Improves Neural Machine Translation.

Minkai Xu, Mingxuan Wang, Zhouhan Lin, Hao Zhou, Weinan Zhang, Lei Li

CoRR, 2020

Discriminator Contrastive Divergence: Semi-Amortized Generative Modeling by Exploring Energy of the Discriminator.

Yuxuan Song, Qiwei Ye, Minkai Xu, Tie-Yan Liu

CoRR, 2020

A Graph to Graphs Framework for Retrosynthesis Prediction.

Chence Shi, Minkai Xu, Hongyu Guo, Ming Zhang, Jian Tang

Proceedings of the 37th International Conference on Machine Learning, 2020

GraphAF: a Flow-based Autoregressive Model for Molecular Graph Generation.

Chence Shi, Minkai Xu, Zhaocheng Zhu, Weinan Zhang, Ming Zhang, Jian Tang

Proceedings of the 8th International Conference on Learning Representations, 2020

Infomax Neural Joint Source-Channel Coding via Adversarial Bit Flip.

Yuxuan Song, Minkai Xu, Lantao Yu, Hao Zhou, Shuo Shao, Yong Yu

Proceedings of the Thirty-Fourth AAAI Conference on Artificial Intelligence, 2020