Mohsen Zakeri

According to our database, Mohsen Zakeri authored at least 8 papers between 2017 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

EvANI benchmarking workflow for evolutionary distance estimation.

Sina Majidian, Stephen Hwang, Mohsen Zakeri, Ben Langmead

Briefings Bioinform., 2025

KeBaB: k-mer Based Breaking for Finding Long MEMs.

Nathaniel K. Brown, Lore Depuydt, Mohsen Zakeri, Anas Alhadi, Nour Allam, Dove Begleiter, Nithin Bharathi Kabilan Karpagavalli, Suchith Sridhar Khajjayam, Hamza Wahed, Travis Gagie, Ben Langmead

Proceedings of the String Processing and Information Retrieval, 2025

2024

Sigmoni: classification of nanopore signal with a compressed pangenome index.

Vikram Shivakumar, Omar Y. Ahmed, Sam Kovaka, Mohsen Zakeri, Ben Langmead

Bioinform., 2024

2021

PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish index.

Fatemeh Almodaresi, Mohsen Zakeri, Rob Patro

Bioinform., November, 2021

Optimizing the accuracy of Lightweight Methods for Short Read Alignment and Quantification.

Mohsen Zakeri

PhD thesis, 2021

2018

Towards Selective-Alignment: Bridging the Accuracy Gap between Alignment-Based and Alignment-Free Transcript Quantification.

Hirak Sarkar, Mohsen Zakeri, Laraib Malik, Rob Patro

Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017

Improved data-driven likelihood factorizations for transcript abundance estimation.

Mohsen Zakeri, Avi Srivastava, Fatemeh Almodaresi, Rob Patro

Bioinform., 2017

On the Distribution of Lexical Features at Multiple Levels of Analysis.

Fatemeh Almodaresi, Lyle H. Ungar, Vivek Kulkarni, Mohsen Zakeri, Salvatore Giorgi, H. Andrew Schwartz

Proceedings of the 55th Annual Meeting of the Association for Computational Linguistics, 2017