Nagiza F. Samatova

According to our database1, Nagiza F. Samatova authored at least 137 papers between 2000 and 2018.

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Bibliography

2018
Causal Relationship Prediction with Continuous Additive Noise Models.
Proceedings of 2018 ACM SIGKDD Workshop on Causal Discovery, 2018

An Intelligent and Hybrid Weighted Fuzzy Time Series Model Based on Empirical Mode Decomposition for Financial Markets Forecasting.
Proceedings of the Advances in Data Mining. Applications and Theoretical Aspects, 2018

Multilevel Heuristics for Rationale-Based Entity Relation Classification in Sentences.
Proceedings of the 27th International Conference on Computational Linguistics, 2018

An Interpretable Generative Adversarial Approach to Classification of Latent Entity Relations in Unstructured Sentences.
Proceedings of the Thirty-Second AAAI Conference on Artificial Intelligence, 2018

2017
Theory-Guided Data Science: A New Paradigm for Scientific Discovery from Data.
IEEE Trans. Knowl. Data Eng., 2017

The Application of the Weighted k-Partite Graph Problem to the Multiple Alignment for Metabolic Pathways.
Journal of Computational Biology, 2017

Leveraging External Knowledge for Phrase-Based Topic Modeling.
Proceedings of the Conference on Technologies and Applications of Artificial Intelligence, 2017

Mining Persistent and Discriminative Communities in Graph Ensembles.
Proceedings of the 29th International Conference on Scientific and Statistical Database Management, 2017

A Lifelong Learning Topic Model Structured Using Latent Embeddings.
Proceedings of the 11th IEEE International Conference on Semantic Computing, 2017

Learning Contextual Embeddings for Knowledge Graph Completion.
Proceedings of the 21st Pacific Asia Conference on Information Systems, 2017

A Network-Fusion Guided Dashboard Interface for Task-Centric Document Curation.
Proceedings of the 22nd International Conference on Intelligent User Interfaces, 2017

Real time utility-based recommendation for revenue optimization via an adaptive online Top-K high utility itemsets mining model.
Proceedings of the 13th International Conference on Natural Computation, 2017

Exchange Pattern Mining in the Bitcoin Transaction Directed Hypergraph.
Proceedings of the Financial Cryptography and Data Security, 2017

A Hybrid CNN-RNN Alignment Model for Phrase-Aware Sentence Classification.
Proceedings of the 15th Conference of the European Chapter of the Association for Computational Linguistics, 2017

Efficient Outlier Detection in Hyperedge Streams Using MinHash and Locality-Sensitive Hashing.
Proceedings of the Complex Networks & Their Applications VI, 2017

A Community-Driven Graph Partitioning Method for Constraint-Based Causal Discovery.
Proceedings of the Complex Networks & Their Applications VI, 2017

Learning Entity Type Embeddings for Knowledge Graph Completion.
Proceedings of the 2017 ACM on Conference on Information and Knowledge Management, 2017

Mining Aspect-Specific Opinions from Online Reviews Using a Latent Embedding Structured Topic Model.
Proceedings of the Computational Linguistics and Intelligent Text Processing, 2017

Towards Automatic Linkage of Knowledge Worker's Claims with Associated Evidence from Screenshots.
Proceedings of the Third IEEE International Conference on Big Data Computing Service and Applications, 2017

An Intelligent Weighted Fuzzy Time Series Model Based on a Sine-Cosine Adaptive Human Learning Optimization Algorithm and Its Application to Financial Markets Forecasting.
Proceedings of the Advanced Data Mining and Applications - 13th International Conference, 2017

2016
On size-constrained minimum s-t cut problems and size-constrained dense subgraph problems.
Theor. Comput. Sci., 2016

Theory-guided Data Science: A New Paradigm for Scientific Discovery.
CoRR, 2016

A Scalable Approach for Outlier Detection in Edge Streams Using Sketch-based Approximations.
Proceedings of the 2016 SIAM International Conference on Data Mining, 2016

Online Prediction of User Actions through an Ensemble Vote from Vector Representation and Frequency Analysis Models.
Proceedings of the 2016 SIAM International Conference on Data Mining, 2016

In Situ Storage Layout Optimization for AMR Spatio-temporal Read Accesses.
Proceedings of the 45th International Conference on Parallel Processing, 2016

AMRZone: A Runtime AMR Data Sharing Framework for Scientific Applications.
Proceedings of the IEEE/ACM 16th International Symposium on Cluster, 2016

Usage Pattern-Driven Dynamic Data Layout Reorganization.
Proceedings of the IEEE/ACM 16th International Symposium on Cluster, 2016

Exploring memory hierarchy and network topology for runtime AMR data sharing across scientific applications.
Proceedings of the 2016 IEEE International Conference on Big Data, 2016

Knowledge-Guided Maximal Clique Enumeration.
Proceedings of the Advanced Data Mining and Applications - 12th International Conference, 2016

Causality-Guided Feature Selection.
Proceedings of the Advanced Data Mining and Applications - 12th International Conference, 2016

Community Detection in Dynamic Attributed Graphs.
Proceedings of the Advanced Data Mining and Applications - 12th International Conference, 2016

2015
An efficient algorithm for pairwise local alignment of protein interaction networks.
J. Bioinformatics and Computational Biology, 2015

The hyperdyadic index and generalized indexing and query with PIQUE.
Proceedings of the 27th International Conference on Scientific and Statistical Database Management, 2015

Response-Guided Community Detection: Application to Climate Index Discovery.
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2015

Exploring Memory Hierarchy to Improve Scientific Data Read Performance.
Proceedings of the 2015 IEEE International Conference on Cluster Computing, 2015

Parallel In Situ Detection of Connected Components in Adaptive Mesh Refinement Data.
Proceedings of the 15th IEEE/ACM International Symposium on Cluster, 2015

2014
Processing MPI Derived Datatypes on Noncontiguous GPU-Resident Data.
IEEE Trans. Parallel Distrib. Syst., 2014

Solving the maximum duo-preservation string mapping problem with linear programming.
Theor. Comput. Sci., 2014

Hello ADIOS: the challenges and lessons of developing leadership class I/O frameworks.
Concurrency and Computation: Practice and Experience, 2014

Theory-Guided Data Science for Climate Change.
IEEE Computer, 2014

DIRAQ: scalable in situ data- and resource-aware indexing for optimized query performance.
Cluster Computing, 2014

RADAR: Runtime Asymmetric Data-Access Driven Scientific Data Replication.
Proceedings of the Supercomputing - 29th International Conference, 2014

Memory-efficient Query-driven Community Detection with Application to Complex Disease Associations.
Proceedings of the 2014 SIAM International Conference on Data Mining, 2014

Fast Set Intersection through Run-Time Bitmap Construction over PForDelta-Compressed Indexes.
Proceedings of the Euro-Par 2014 Parallel Processing, 2014

Improving Read Performance with Online Access Pattern Analysis and Prefetching.
Proceedings of the Euro-Par 2014 Parallel Processing, 2014

Transparent in Situ Data Transformations in ADIOS.
Proceedings of the 14th IEEE/ACM International Symposium on Cluster, 2014

2013
ALACRITY: Analytics-Driven Lossless Data Compression for Rapid In-Situ Indexing, Storing, and Querying.
Trans. Large-Scale Data- and Knowledge-Centered Systems, 2013

A graph-based approach to find teleconnections in climate data.
Statistical Analysis and Data Mining, 2013

Discovery of extreme events-related communities in contrasting groups of physical system networks.
Data Min. Knowl. Discov., 2013

ISABELA for effective in situ compression of scientific data.
Concurrency and Computation: Practice and Experience, 2013

Automatic Detection and Correction of Multi-class Classification Errors Using System Whole-part Relationships.
Proceedings of the 13th SIAM International Conference on Data Mining, 2013

Forecast Oriented Classification of Spatio-Temporal Extreme Events.
Proceedings of the IJCAI 2013, 2013

Coupled Heterogeneous Association Rule Mining (CHARM): Application Toward Inference of Modulatory Climate Relationships.
Proceedings of the 2013 IEEE 13th International Conference on Data Mining, 2013

Scalable in situ scientific data encoding for analytical query processing.
Proceedings of the 22nd International Symposium on High-Performance Parallel and Distributed Computing, 2013

A Generic High-Performance Method for Deinterleaving Scientific Data.
Proceedings of the Euro-Par 2013 Parallel Processing, 2013

PARLO: PArallel Run-Time Layout Optimization for Scientific Data Explorations with Heterogeneous Access Patterns.
Proceedings of the 13th IEEE/ACM International Symposium on Cluster, 2013

2012
NIBBS-Search for Fast and Accurate Prediction of Phenotype-Biased Metabolic Systems.
PLoS Computational Biology, 2012

Community-based anomaly detection in evolutionary networks.
J. Intell. Inf. Syst., 2012

Spice: discovery of phenotype-determining component interplays.
BMC Systems Biology, 2012

Toward Data-driven, Semi-automatic Inference of Phenomenological Physical Models: Application to Eastern Sahel Rainfall.
Proceedings of the Twelfth SIAM International Conference on Data Mining, 2012

Byte-precision level of detail processing for variable precision analytics.
Proceedings of the SC Conference on High Performance Computing Networking, 2012

Multi-level Layout Optimization for Efficient Spatio-temporal Queries on ISABELA-compressed Data.
Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium, 2012

MLOC: Multi-level Layout Optimization Framework for Compressed Scientific Data Exploration with Heterogeneous Access Patterns.
Proceedings of the 41st International Conference on Parallel Processing, 2012

Hierarchical Classifier-Regression Ensemble for Multi-phase Non-linear Dynamic System Response Prediction: Application to Climate Analysis.
Proceedings of the 12th IEEE International Conference on Data Mining Workshops, 2012

ISOBAR Preconditioner for Effective and High-throughput Lossless Data Compression.
Proceedings of the IEEE 28th International Conference on Data Engineering (ICDE 2012), 2012

ISOBAR hybrid compression-I/O interleaving for large-scale parallel I/O optimization.
Proceedings of the 21st International Symposium on High-Performance Parallel and Distributed Computing, 2012

On the path to sustainable, scalable, and energy-efficient data analytics: Challenges, promises, and future directions.
Proceedings of the 2012 International Green Computing Conference, 2012

Analytics-Driven Lossless Data Compression for Rapid In-situ Indexing, Storing, and Querying.
Proceedings of the Database and Expert Systems Applications, 2012

Improving I/O Throughput with PRIMACY: Preconditioning ID-Mapper for Compressing Incompressibility.
Proceedings of the 2012 IEEE International Conference on Cluster Computing, 2012

Enabling Fast, Noncontiguous GPU Data Movement in Hybrid MPI+GPU Environments.
Proceedings of the 2012 IEEE International Conference on Cluster Computing, 2012

2011
Coordinating Computation and I/O in Massively Parallel Sequence Search.
IEEE Trans. Parallel Distrib. Syst., 2011

Transparent runtime parallelization of the R scripting language.
J. Parallel Distrib. Comput., 2011

On the parameterized complexity of the Multi-MCT and Multi-MCST problems.
J. Comb. Optim., 2011

DENSE: efficient and prior knowledge-driven discovery of phenotype-associated protein functional modules.
BMC Systems Biology, 2011

Efficient alpha, beta-motif Finder for Identification of Phenotype-related Functional Modules.
BMC Bioinformatics, 2011

ISABELA-QA: query-driven analytics with ISABELA-compressed extreme-scale scientific data.
Proceedings of the Conference on High Performance Computing Networking, 2011

Sensitive and Specific Identification of Protein Complexes in "Perturbed" Protein Interaction Networks from Noisy Pull-Down Data.
Proceedings of the 25th IEEE International Symposium on Parallel and Distributed Processing, 2011

Classification of Emerging Extreme Event Tracks in Multivariate Spatio-Temporal Physical Systems Using Dynamic Network Structures: Application to Hurricane Track Prediction.
Proceedings of the IJCAI 2011, 2011

Biclustering-Driven Ensemble of Bayesian Belief Network Classifiers for Underdetermined Problems.
Proceedings of the IJCAI 2011, 2011

S-preconditioner for Multi-fold Data Reduction with Guaranteed User-Controlled Accuracy.
Proceedings of the 11th IEEE International Conference on Data Mining, 2011

Compressing the Incompressible with ISABELA: In-situ Reduction of Spatio-temporal Data.
Proceedings of the Euro-Par 2011 Parallel Processing - 17th International Conference, 2011

Lessons Learned from Exploring the Backtracking Paradigm on the GPU.
Proceedings of the Euro-Par 2011 Parallel Processing - 17th International Conference, 2011

Data Guided Discovery of Dynamic Climate Dipoles.
Proceedings of the 2011 Conference on Intelligent Data Understanding, 2011

Detecting Pathway Cross-Talks by Analyzing Conserved Functional Modules across Multiple Phenotype-Expressing Organisms.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

2010
Theoretical underpinnings for maximal clique enumeration on perturbed graphs.
Theor. Comput. Sci., 2010

A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry.
BMC Bioinformatics, 2010

Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions.
Database, 2010

Improving the Performance of Bayesian Belief Network Classifiers via Decision Tree Based Feature Selection.
Proceedings of the 2010 International Conference on Information & Knowledge Engineering, 2010

Detecting and Tracking Community Dynamics in Evolutionary Networks.
Proceedings of the ICDMW 2010, 2010

The Multiple Alignment Algorithm for Metabolic Pathways without Abstraction.
Proceedings of the ICDMW 2010, 2010

Multiple Alignment of Large Interaction Networks by Fast Identifying Maximal Conserved Patterns.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2010

Discovery of Enriched Biological Motifs Using Knowledge Priors with Application to Biohydrogen Production.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2010

PackPlay: Mining Semantic Data in Collaborative Games.
Proceedings of the Fourth Linguistic Annotation Workshop, 2010

2009
On parameterized complexity of the Multi-MCS problem.
Theor. Comput. Sci., 2009

BioDEAL: community generation of biological annotations.
BMC Med. Inf. & Decision Making, 2009

A scalable, parallel algorithm for maximal clique enumeration.
J. Parallel Distrib. Comput., 2009

Fast Matching for All Pairs Similarity Search.
Proceedings of the 2009 IEEE/WIC/ACM International Conference on Web Intelligence, 2009

Pairwise Alignment of Interaction Networks by Fast Identification of Maximal Conserved Patterns.
Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

WebBANC: Building Semantically-Rich Annotated Corpora from Web User Annotations of Minority Languages.
Proceedings of the 17th Nordic Conference of Computational Linguistics, 2009

On perturbation theory and an algorithm for maximal clique enumeration in uncertain and noisy graphs.
Proceedings of the 1st ACM SIGKDD Workshop on Knowledge Discovery from Uncertain Data, 2009

Incremental all pairs similarity search for varying similarity thresholds.
Proceedings of the 3rd Workshop on Social Network Mining and Analysis, 2009

Web-Enabled R for Large-Scale Collaborative Data Mining: A Survey.
Proceedings of the 2009 International Conference on Information & Knowledge Engineering, 2009

pR: Lightweight, Easy-to-Use Middleware to Plugin Parallel Analytical Computing with R.
Proceedings of the 2009 International Conference on Information & Knowledge Engineering, 2009

Incremental All Pairs Similarity Search for Varying Similarity Thresholds with Reduced I/O Overhead.
Proceedings of the 2009 International Conference on Information & Knowledge Engineering, 2009

PR: Automatic parallelization of data-parallel statistical computing codes for R in hybrid multi-node and multi-core environments.
Proceedings of the IADIS International Conference Applied Computing 2009, 2009

Systematic Evaluation of Convergence Criteria in Iterative Training for NLP.
Proceedings of the Twenty-Second International Florida Artificial Intelligence Research Society Conference, 2009

A Fast, Accurate Algorithm for Identifying Functional Modules Through Pairwise Local Alignment of Protein Interaction Networks.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2009

An Algorithm for the Discovery of Phenotype Related Metabolic Pathways.
Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009

Scientific Data Analysis.
Proceedings of the Scientific Data Management - Challenges, Technology, and Deployment., 2009

2008
From pull-down data to protein interaction networks and complexes with biological relevance.
Bioinformatics, 2008

Adaptive Request Scheduling for Parallel Scientific Web Services.
Proceedings of the Scientific and Statistical Database Management, 2008

Parallel, scalable, memory-efficient backtracking for combinatoria modeling of large-scale biological systems.
Proceedings of the 22nd IEEE International Symposium on Parallel and Distributed Processing, 2008

Rapid and robust ranking of text documents in a dynamically changing corpus.
Proceedings of the 6th ACS/IEEE International Conference on Computer Systems and Applications, 2008

2007
A Multi-Level Cache Model for Run-Time Optimization of Remote Visualization.
IEEE Trans. Vis. Comput. Graph., 2007

Sampling streaming data with replacement.
Computational Statistics & Data Analysis, 2007

The Buffered Work-Pool Approach for Search-Tree Based Optimization Algorithms.
Proceedings of the Parallel Processing and Applied Mathematics, 2007

Automatic Parallelization of Scripting Languages: Toward Transparent Desktop Parallel Computing.
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

Multi-stage Framework to Infer Protein Functional Modules from Mass Spectrometry Pull-Down Data with Assessment of Biological Relevance.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007

The Maximum Common Subgraph Problem: Faster Solutions via Vertex Cover.
Proceedings of the 2007 IEEE/ACS International Conference on Computer Systems and Applications (AICCSA 2007), 2007

2006
The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior.
Computational Biology and Chemistry, 2006

Multi-Criterion Active Learning in Conditional Random Fields.
Proceedings of the 18th IEEE International Conference on Tools with Artificial Intelligence (ICTAI 2006), 2006

2005
On FastMap and the Convex Hull of Multivariate Data: Toward Fast and Robust Dimension Reduction.
IEEE Trans. Pattern Anal. Mach. Intell., 2005

Genome-Scale Computational Approaches to Memory-Intensive Applications in Systems Biology.
Proceedings of the ACM/IEEE SC2005 Conference on High Performance Networking and Computing, 2005

Efficient Data Access for Parallel BLAST.
Proceedings of the 19th International Parallel and Distributed Processing Symposium (IPDPS 2005), 2005

Accelerating Exact Stochastic Simulation Using Reconfigurable Computing.
Proceedings of The 2005 International Conference on Engineering of Reconfigurable Systems and Algorithms, 2005

A New Approach and Faster Exact Methods for the Maximum Common Subgraph Problem.
Proceedings of the Computing and Combinatorics, 11th Annual International Conference, 2005

RScaLAPACK: High-Performance Parallel Statistical Computing with R and ScaLAPACK.
Proceedings of the ISCA 18th International Conference on Parallel and Distributed Computing Systems, 2005

2004
Reservoir-Based Random Sampling with Replacement from Data Stream.
Proceedings of the Fourth SIAM International Conference on Data Mining, 2004

In-Silico Prediction of Surface Residue Clusters for Enzyme-Substrate Specificity.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

2003
Interoperability of Visualization Software and Data Models is NOT an Achievable Goal.
Proceedings of the 14th IEEE Visualization 2003 Conference, 2003

Inference of Protein-Protein Interactions by Unlikely Profile Pair.
Proceedings of the 3rd IEEE International Conference on Data Mining (ICDM 2003), 2003

An SVM-based Algorithm for Identification of Photosynthesis-specific Genome Features.
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003

2002
RACHET: An Efficient Cover-Based Merging of Clustering Hierarchies from Distributed Datasets.
Distributed and Parallel Databases, 2002

Distributed Dimension Reduction Algorithms for Widely Dispersed Data.
Proceedings of the International Conference on Parallel and Distributed Computing Systems, 2002

Parallel Out-of-Core Algorithm for Genome-Scale Enumeration of Metabolic Systemic Pathways.
Proceedings of the 16th International Parallel and Distributed Processing Symposium (IPDPS 2002), 2002

An Ontology-Based HTML to XML Conversion Using Intelligent Agents.
Proceedings of the 35th Hawaii International Conference on System Sciences (HICSS-35 2002), 2002

2000
Agent-based Architecture for Flexible Lean Cell Design, Analysis and Evaluation.
Proceedings of the Global Engineering, 2000


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