Noah M. Daniels

According to our database, Noah M. Daniels authored at least 28 papers between 2001 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2026

MuSAlS: A Fast Multiple Sequence Alignment Approach Using Hierarchical Clustering.

Emily Light, Morgan E. Prior, Noah M. Daniels, Najib Ishaq

CoRR, January, 2026

MEDFORD in a Box: Improvements and Future Directions for a Metadata Description Language.

Polina Shpilker, Benjamin Stubbs, Michael Sayers, Yumin Lee, Lenore Cowen, Donna K. Slonim, Shaun Wallace, Alva L. Couch, Noah M. Daniels

CoRR, January, 2026

2025

Let them have CAKES: A Cutting-Edge Algorithm for Scalable, Efficient, and Exact Search on Big Data.

Morgan E. Prior, Thomas J. Howard III, Oliver McLaughlin, Terry Ferguson, Najib Ishaq, Noah M. Daniels

Proceedings of the IEEE International Conference on Big Data, 2025

2024

Cross-Referencing Metadata Through an Extension of the MEDFORD Language.

Polina Shpilker, Benjamin Stubbs, Michael Sayers, Lenore Cowen, Shaun Wallace, Alva L. Couch, Noah M. Daniels

Proceedings of the Metadata and Semantic Research - 18th Research Conference, 2024

AnVILMEDFORD: Documenting Cloud-Based Analysis Projects Using the MEDFORD Metadata Language.

Benjamin Stubbs, Polina Shpilker, Michael Sayers, Shaun Wallace, Noah M. Daniels, Alva L. Couch

Proceedings of the IEEE International Conference on Big Data, 2024

Generalized compression and compressive search of large datasets.

Morgan E. Prior, Thomas J. Howard III, Emily Light, Najib Ishaq, Noah M. Daniels

Proceedings of the IEEE International Conference on Big Data, 2024

2023

CLAM-Accelerated K-Nearest Neighbors Entropy-Scaling Search of Large High-Dimensional Datasets via an Actualization of the Manifold Hypothesis.

Morgan E. Prior, Thomas J. Howard III, Oliver McLaughlin, Najib Ishaq, Noah M. Daniels

CoRR, 2023

Context-Sensitive Editing for the MEDFORD Metadata Language.

Liam Strand, Andrew Powers, Polina Shpilker, Lenore Cowen, Alva L. Couch, Noah M. Daniels

Proceedings of the Metadata and Semantic Research - 17th Research Conference, 2023

2022

MEDFORD: A human- and machine-readable metadata markup language.

Polina Shpilker, John Freeman, Hailey McKelvie, Jill Ashey, Jay-Miguel Fonticella, Hollie Putnam, Jane Greenberg, Lenore Cowen, Alva L. Couch, Noah M. Daniels

Database J. Biol. Databases Curation, 2022

Determining population structure from k-mer frequencies.

Yana Hrytsenko, Noah M. Daniels, Rachel S. Schwartz

Proceedings of the BCB '22: 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Northbrook, Illinois, USA, August 7, 2022

2021

MEtaData Format for Open Reef Data (MEDFORD).

Polina Shpilker, John Freeman, Hailey McKelvie, Jill Ashey, Jay-Miguel Fonticella, Hollie Putnam, Jane Greenberg, Lenore Cowen, Alva L. Couch, Noah M. Daniels

Proceedings of the Metadata and Semantic Research - 15th International Conference, 2021

Clustered Hierarchical Anomaly and Outlier Detection Algorithms.

Najib Ishaq, Thomas J. Howard III, Noah M. Daniels

Proceedings of the 2021 IEEE International Conference on Big Data (Big Data), 2021

2019

Clustered Hierarchical Entropy-Scaling Search of Astronomical and Biological Data.

Najib Ishaq, George Student, Noah M. Daniels

Proceedings of the 2019 IEEE International Conference on Big Data (IEEE BigData), 2019

2018

Efficient Distance Calculations Between Genomes Using Mathematical Approximation.

Yana Hrytsenko, Noah M. Daniels, Rachel S. Schwartz

Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017

Assortative Mixture of English Parts of Speech.

Timothy Leonard, Lutz Hamel, Noah M. Daniels, Natallia V. Katenka

Proceedings of the Complex Networks & Their Applications VI, 2017

Analysis of 16S Genomic Data using Graphical Databases.

Olivia M. Ahern, Rebecca J. Stevick, Li Yuan, Noah M. Daniels

Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

2016

Computational biology in the 21st century: scaling with compressive algorithms.

Bonnie Berger, Noah M. Daniels

Commun. ACM, 2016

An Evaluation Framework for Lossy Compression of Genome Sequencing Quality Values.

Claudio Alberti, Noah M. Daniels, Mikel Hernaez, Jan Voges, Rachel L. Goldfeder, Ana A. Hernandez-Lopez, Marco Mattavelli, Bonnie Berger

Proceedings of the 2016 Data Compression Conference, 2016

2015

Entropy-scaling search of massive biological data.

Yun William Yu, Noah M. Daniels, David Christian Danko, Bonnie Berger

CoRR, 2015

2013

Remote Homology Detection in Proteins Using Graphical Models

Noah M. Daniels

CoRR, 2013

Compressive genomics for protein databases.

Noah M. Daniels, Andrew Gallant, Jian Peng, Lenore J. Cowen, Michael Baym, Bonnie Berger

Bioinform., 2013

MRFy: Remote Homology Detection for Beta-Structural Proteins Using Markov Random Fields and Stochastic Search.

Noah M. Daniels, Andrew Gallant, Norman Ramsey, Lenore J. Cowen

Proceedings of the ACM Conference on Bioinformatics, 2013

2012

Formatt: Correcting Protein Multiple Structural Alignments by Incorporating Sequence Alignment.

Noah M. Daniels, Shilpa Nadimpalli, Lenore J. Cowen

BMC Bioinform., 2012

SMURFLite: combining simplified Markov random fields with simulated evolution improves remote homology detection for beta-structural proteins into the twilight zone.

Noah M. Daniels, Raghavendra Hosur, Bonnie Berger, Lenore J. Cowen

Bioinform., 2012

Experience report: Haskell in computational biology.

Noah M. Daniels, Andrew Gallant, Norman Ramsey

Proceedings of the ACM SIGPLAN International Conference on Functional Programming, 2012

2011

Formatt: correcting protein multiple structural alignments by sequence peeking.

Shilpa Nadimpalli, Noah M. Daniels, Lenore Cowen

Proceedings of the ACM International Conference on Bioinformatics, 2011

2010

Touring Protein Space with Matt.

Noah M. Daniels, Anoop Kumar, Lenore Cowen, Matthew Menke

Proceedings of the Bioinformatics Research and Applications, 6th International Symposium, 2010

2001

The Maelstrom: Network Service Debugging via "Ineffective Procedures".

Alva L. Couch, Noah M. Daniels

Proceedings of the 15th Conference on Systems Administration (LISA 2001), 2001