Lenore Cowen

According to our database, Lenore Cowen authored at least 79 papers between 1986 and 2024.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of two.

2024

Quantifying Media Influence on Covid-19 Mask-Wearing Beliefs.

Nicholas Rabb, Nitya Nadgir, Jan P. de Ruiter, Lenore Cowen

CoRR, 2024

The VOROS: Lifting ROC curves to 3D.

Christopher Ratigan, Lenore Cowen

CoRR, 2024

2023

Investigating the effect of selective exposure, audience fragmentation, and echo-chambers on polarization in dynamic media ecosystems.

Nicholas Rabb, Lenore Cowen, Jan P. de Ruiter

Appl. Netw. Sci., December, 2023

TT3D: Leveraging precomputed protein 3D sequence models to predict protein-protein interactions.

Samuel Sledzieski, Kapil Devkota, Rohit Singh, Lenore Cowen, Bonnie Berger

Bioinform., October, 2023

2022

Majority Vote Cascading: A Semi-Supervised Framework for Improving Protein Function Prediction.

John Lazarsfeld, Jonathan Rodríguez, Mert Erden, Yuelin Liu, Lenore J. Cowen

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

GLIDER: function prediction from GLIDE-based neighborhoods.

Kapil Devkota, Henri Schmidt, Matthew Werenski, James M. Murphy, Mert Erden, Victor Arsenescu, Lenore J. Cowen

Bioinform., 2022

MEDFORD: A human- and machine-readable metadata markup language.

Polina Shpilker, John Freeman, Hailey McKelvie, Jill Ashey, Jay-Miguel Fonticella, Hollie Putnam, Jane Greenberg, Lenore Cowen, Alva L. Couch, Noah M. Daniels

Database J. Biol. Databases Curation, 2022

Cognitive Cascades within Media Ecosystems: Simulating Fragmentation, Selective Exposure and Media Tactics to Investigate Polarization.

Nicholas Rabb, Lenore Cowen

Proceedings of the Complex Networks and Their Applications XI, 2022

Embodied Notes: A Cognitive Support Tool For Remote Scientific Collaboration in VR.

Monsurat Olaosebikan, Claudia Aranda Barrios, Lenore Cowen, Orit Shaer

Proceedings of the CHI '22: CHI Conference on Human Factors in Computing Systems, New Orleans, LA, USA, 29 April 2022, 2022

Identifying Cognitive and Creative Support Needs for Remote Scientific Collaboration using VR: Practices, Affordances, and Design Implications.

Monsurat Olaosebikan, Claudia Aranda Barrios, Blessing Kolawole, Lenore Cowen, Orit Shaer

Proceedings of the C&C '22: Creativity and Cognition, Venice, Italy, June 20 - 23, 2022, 2022

Combining spectral clustering and large cut algorithms to find compensatory functional modules from yeast physical and genetic interaction data with GLASS.

Blessing Kolawole, Lenore J. Cowen

Proceedings of the BCB '22: 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Northbrook, Illinois, USA, August 7, 2022

Neighborhood embedding and re-ranking of disease genes with ADAGIO.

Mert Erden, Megan Gelement, Sarrah Hakimjee, Kyla Levin, Mary-Joy Sidhom, Kapil Devkota, Lenore J. Cowen

Proceedings of the BCB '22: 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Northbrook, Illinois, USA, August 7, 2022

2021

Diffusion State Distances: Multitemporal Analysis, Fast Algorithms, and Applications to Biological Networks.

Lenore Cowen, Kapil Devkota, Xiaozhe Hu, James M. Murphy, Kaiyi Wu

SIAM J. Math. Data Sci., 2021

Cognitive Contagion: How to model (and potentially counter) the spread of fake news.

Nicholas Rabb, Lenore Cowen, Jan P. de Ruiter, Matthias Scheutz

CoRR, 2021

Bioinformatics of corals: Investigating heterogeneous omics data from coral holobionts for insight into reef health and resillience.

Lenore J. Cowen, Judith Klein-Seetharaman, Hollie Putnam

Proceedings of the Biocomputing 2021: Proceedings of the Pacific Symposium, 2021

MEtaData Format for Open Reef Data (MEDFORD).

Polina Shpilker, John Freeman, Hailey McKelvie, Jill Ashey, Jay-Miguel Fonticella, Hollie Putnam, Jane Greenberg, Lenore Cowen, Alva L. Couch, Noah M. Daniels

Proceedings of the Metadata and Semantic Research - 15th International Conference, 2021

Random-Walk Based Approximate k-Nearest Neighbors Algorithm for Diffusion State Distance.

Lenore J. Cowen, Xiaozhe Hu, Junyuan Lin, Yue Shen, Kaiyi Wu

Proceedings of the Large-Scale Scientific Computing - 13th International Conference, 2021

2020

Preface Special Issue: RECOMB 2019.

Lenore J. Cowen

J. Comput. Biol., 2020

GLIDE: combining local methods and diffusion state embeddings to predict missing interactions in biological networks.

Kapil Devkota, James M. Murphy, Lenore J. Cowen

Bioinform., 2020

2018

Computing the diffusion state distance on graphs via algebraic multigrid and random projections.

Junyuan Lin, Lenore J. Cowen, Benjamin J. Hescott, Xiaozhe Hu

Numer. Linear Algebra Appl., 2018

Highlights Talks at ACM BCB 2018.

Lenore Cowen, Xiaoqian Jiang

Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017

When should we NOT transfer functional annotation between sequence paralogs?

Mengfei Cao, Lenore J. Cowen

Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

Detangling PPI Networks to Uncover Functionally Meaningful Clusters.

Sarah Hall-Swan, Jake Crawford, Rebecca Newman, Lenore J. Cowen

Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

2016

Packet Routing.

Lenore J. Cowen

Encyclopedia of Algorithms, 2016

2015

MRFy: Remote Homology Detection for Beta-Structural Proteins Using Markov Random Fields and Stochastic Search.

Noah M. Daniels, Andrew Gallant, Norman Ramsey, Lenore J. Cowen

IEEE ACM Trans. Comput. Biol. Bioinform., 2015

2014

New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence.

Mengfei Cao, Christopher M. Pietras, Xian Feng, Kathryn J. Doroschak, Thomas Schaffner, Jisoo Park, Hao Zhang, Lenore J. Cowen, Benjamin J. Hescott

Bioinform., 2014

2013

Genecentric: a package to uncover graph-theoretic structure in high-throughput epistasis data.

Andrew Gallant, Mark D. M. Leiserson, Maxim Kachalov, Lenore J. Cowen, Benjamin J. Hescott

BMC Bioinform., 2013

Compressive genomics for protein databases.

Noah M. Daniels, Andrew Gallant, Jian Peng, Lenore J. Cowen, Michael Baym, Bonnie Berger

Bioinform., 2013

2012

Molli: Interactive Visualization for Exploratory Protein Analysis.

Sara L. Su, Connor Gramazio, Daniela Extrum-Fernandez, Caitlin Crumm, Lenore J. Cowen, Matthew Menke, Megan Strait

IEEE Computer Graphics and Applications, 2012

Formatt: Correcting Protein Multiple Structural Alignments by Incorporating Sequence Alignment.

Noah M. Daniels, Shilpa Nadimpalli, Lenore J. Cowen

BMC Bioinform., 2012

SMURFLite: combining simplified Markov random fields with simulated evolution improves remote homology detection for beta-structural proteins into the twilight zone.

Noah M. Daniels, Raghavendra Hosur, Bonnie Berger, Lenore J. Cowen

Bioinform., 2012

Remote homology detection on alpha-structural proteins using simulated evolution.

Mengfei Cao, Lenore J. Cowen

Proceedings of the ACM International Conference on Bioinformatics, 2012

2011

Inferring Mechanisms of Compensation from E-MAP and SGA Data Using Local Search Algorithms for Max Cut.

Mark D. M. Leiserson, Diana Tatar, Lenore J. Cowen, Benjamin J. Hescott

J. Comput. Biol., 2011

Formatt: correcting protein multiple structural alignments by sequence peeking.

Shilpa Nadimpalli, Noah M. Daniels, Lenore Cowen

Proceedings of the ACM International Conference on Bioinformatics, 2011

2010

Markov random fields reveal an N-terminal double beta-propeller motif as part of a bacterial hybrid two-component sensor system.

Matthew Menke, Bonnie Berger, Lenore Cowen

Proc. Natl. Acad. Sci. USA, 2010

Evaluating Between-Pathway Models with Expression Data.

Benjamin J. Hescott, Mark D. M. Leiserson, Lenore J. Cowen, Donna K. Slonim

J. Comput. Biol., 2010

Recognition of beta-structural motifs using hidden Markov models trained with simulated evolution.

Anoop Kumar, Lenore Cowen

Bioinform., 2010

Touring Protein Space with Matt.

Noah M. Daniels, Anoop Kumar, Lenore Cowen, Matthew Menke

Proceedings of the Bioinformatics Research and Applications, 6th International Symposium, 2010

2009

BETASCAN: Probable β-amyloids Identified by Pairwise Probabilistic Analysis.

Allen W. Bryan Jr., Matthew Menke, Lenore J. Cowen, Susan Lindquist, Bonnie Berger

PLoS Comput. Biol., 2009

Augmented training of hidden Markov models to recognize remote homologs via simulated evolution.

Anoop Kumar, Lenore Cowen

Bioinform., 2009

2008

Packet Routing.

Lenore Cowen

Proceedings of the Encyclopedia of Algorithms - 2008 Edition, 2008

Matt: Local Flexibility Aids Protein Multiple Structure Alignment.

Matthew Menke, Bonnie Berger, Lenore Cowen

PLoS Comput. Biol., 2008

Compact roundtrip routing with topology-independent node names.

Marta Arias, Lenore Cowen, Kofi A. Laing

J. Comput. Syst. Sci., 2008

Totally Greedy Coin Sets and Greedy Obstructions.

Lenore J. Cowen, Robert Cowen, Arthur Steinberg

Electron. J. Comb., 2008

A Distance-Based Method for Detecting Horizontal Gene Transfer in Whole Genomes.

Xintao Wei, Lenore Cowen, Carla E. Brodley, Arthur Brady, D. Sculley, Donna K. Slonim

Proceedings of the Bioinformatics Research and Applications, 2008

2006

Compact Routing with Name Independence.

Marta Arias, Lenore Cowen, Kofi A. Laing, Rajmohan Rajaraman, Orjeta Taka

SIAM J. Discret. Math., 2006

Exact Distance Labelings Yield Additive-Stretch Compact Routing Schemes.

Arthur Brady, Lenore Cowen

Proceedings of the Distributed Computing, 20th International Symposium, 2006

Compact routing with additive stretch using distance labelings.

Arthur Brady, Lenore Cowen

Proceedings of the SPAA 2006: Proceedings of the 18th Annual ACM Symposium on Parallelism in Algorithms and Architectures, Cambridge, Massachusetts, USA, July 30, 2006

Compact Routing on Power Law Graphs with Additive Stretch.

Arthur Brady, Lenore J. Cowen

Proceedings of the Eighth Workshop on Algorithm Engineering and Experiments, 2006

2005

Wrap-and-Pack: A New Paradigm for Beta Structural Motif Recognition with Application to Recognizing Beta Trefoils.

Matthew Menke, Jonathan King, Bonnie Berger, Lenore Cowen

J. Comput. Biol., 2005

2004

Compact roundtrip routing in directed networks.

Lenore Cowen, Christopher G. Wagner

J. Algorithms, 2004

The distinguishing number of the hypercube.

Bill Bogstad, Lenore Cowen

Discret. Math., 2004

Approximation Algorithms for the Class Cover Problem.

Adam Cannon, Lenore Cowen

Ann. Math. Artif. Intell., 2004

Wrap-and-pack: a new paradigm for beta structural motif recognition with application to recognizing beta trefoils.

Matthew Menke, Eben Scanlon, Jonathan King, Bonnie Berger, Lenore Cowen

Proceedings of the Eighth Annual International Conference on Computational Molecular Biology, 2004

2002

Guest Editor's Foreword.

Lenore Cowen, Ronald Fagin, Joe Kilian, Jon M. Kleinberg

J. Comput. Syst. Sci., 2002

Predicting the Beta-Helix Fold from Protein Sequence Data.

Lenore Cowen, Phil Bradley, Matthew Menke, Jonathan King, Bonnie Berger

J. Comput. Biol., 2002

Foreword.

Lenore Cowen, Jerrold R. Griggs, Douglas B. West

Discret. Math., 2002

2001

Compact Routing with Minimum Stretch.

Lenore Cowen

J. Algorithms, 2001

2000

Compact roundtrip routing in directed networks (extended abstract).

Lenore Cowen, Christopher G. Wagner

Proceedings of the Nineteenth Annual ACM Symposium on Principles of Distributed Computing, 2000

1999

On the local distinguishing numbers of cycles.

C. T. Cheng, Lenore Cowen

Discret. Math., 1999

Compact Roundtrip Routing for Digraphs.

Lenore Cowen, Christopher G. Wagner

Proceedings of the Tenth Annual ACM-SIAM Symposium on Discrete Algorithms, 1999

1998

Near-Linear Time Construction of Sparse Neighborhood Covers.

Baruch Awerbuch, Bonnie Berger, Lenore Cowen, David Peleg

SIAM J. Comput., 1998

A Formal Framework for Evaluating Heuristic Programs.

Lenore Cowen, Joan Feigenbaum, Sampath Kannan

Ann. Math. Artif. Intell., 1998

1997

Defective coloring revisited.

Lenore Cowen, Wayne Goddard, C. Esther Jesurum

J. Graph Theory, 1997

The Offset Problem.

Lenore Cowen, Rudolf Mathar

Comb. Probab. Comput., 1997

Coloring with Defect.

Lenore Cowen, Wayne Goddard, C. Esther Jesurum

Proceedings of the Eighth Annual ACM-SIAM Symposium on Discrete Algorithms, 1997

1996

Hypercube sandwich approach to conferencing.

Joanne F. Houlahan, Lenore J. Cowen, Gerald M. Masson

J. Supercomput., 1996

Fast Distributed Network Decompositions and Covers.

Baruch Awerbuch, Bonnie Berger, Lenore Cowen, David Peleg

J. Parallel Distributed Comput., 1996

The Offset Problem (Abstract).

Lenore Cowen, Rudolf Mathar

Proceedings of the Fifteenth Annual ACM Symposium on Principles of Distributed Computing, 1996

1995

Asymptotic enumeration of full graphs.

Daniel J. Kleitman, Fernando R. Lasaga, Lenore J. Cowen

J. Graph Theory, 1995

Scheduling with Concurrency-Based Constraints.

Bonnie Berger, Lenore Cowen

J. Algorithms, 1995

1994

Low-Diameter Graph Decomposition Is in NC.

Baruch Awerbuch, Bonnie Berger, Lenore Cowen, David Peleg

Random Struct. Algorithms, 1994

Efficient asynchronous distributed symmetry breaking.

Baruch Awerbuch, Lenore Cowen, Mark A. Smith

Proceedings of the Twenty-Sixth Annual ACM Symposium on Theory of Computing, 1994

1993

Concurrence Probabilities for a Locally Slotted Packet Radio Network by Combinatorial Methods.

Rudolf Mathar, Lenore Cowen

Perform. Evaluation, 1993

Near-Linear Cost Sequential and Distribured Constructions of Sparse Neighborhood Covers

Baruch Awerbuch, Bonnie Berger, Lenore Cowen, David Peleg

Proceedings of the 34th Annual Symposium on Foundations of Computer Science, 1993

1992

Fast Network Decomposition (Extended Abstract).

Baruch Awerbuch, Bonnie Berger, Lenore Cowen, David Peleg

Proceedings of the Eleventh Annual ACM Symposium on Principles of Distributed Computing, 1992

1991

Complexity Results and Algorithms for { <, <=, = }-Constrained Scheduling.

Bonnie Berger, Lenore Cowen

Proceedings of the Second Annual ACM/SIGACT-SIAM Symposium on Discrete Algorithms, 1991

1989

On the Structure of Secret Key Exchange Protocols.

Mihir Bellare, Lenore Cowen, Shafi Goldwasser

Proceedings of the Distributed Computing And Cryptography, 1989

1986

Defective colorings of graphs in surfaces: Partitions into subgraphs of bounded valency.

Lenore J. Cowen, Robert Cowen, Douglas R. Woodall

J. Graph Theory, 1986