Yun William Yu

According to our database, Yun William Yu authored at least 23 papers between 2014 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Image-centric compression of protein structures improves space savings.

Luke Staniscia, Yun William Yu

BMC Bioinform., December, 2023

Reverse-Engineering Decoding Strategies Given Blackbox Access to a Language Generation System.

Daphne Ippolito, Nicholas Carlini, Katherine Lee, Milad Nasr, Yun William Yu

Proceedings of the 16th International Natural Language Generation Conference, 2023

HyperMinHash: MinHash in LogLog Space (Extended Abstract).

Yun William Yu, Griffin M. Weber

Proceedings of the 39th IEEE International Conference on Data Engineering, 2023

2022

Theory of local k-mer selection with applications to long-read alignment.

Jim Shaw, Yun William Yu

Bioinform., October, 2022

HyperMinHash: MinHash in LogLog Space.

Yun William Yu, Griffin M. Weber

IEEE Trans. Knowl. Data Eng., 2022

flopp: Extremely Fast Long-Read Polyploid Haplotype Phasing by Uniform Tree Partitioning.

Jim Shaw, Yun William Yu

J. Comput. Biol., 2022

Skiing Is Easy, Gymnastics Is Hard: Complexity of Routine Construction in Olympic Sports.

James Koppel, Yun William Yu

Proceedings of the 11th International Conference on Fun with Algorithms, 2022

2021

Levenshtein Distance, Sequence Comparison and Biological Database Search.

Bonnie Berger, Michael S. Waterman, Yun William Yu

IEEE Trans. Inf. Theory, 2021

Inherent privacy limitations of decentralized contact tracing apps.

Yoshua Bengio, Daphne Ippolito, Richard Janda, Max Jarvie, Benjamin Prud'homme, Jean-Franois Rousseau, Abhinav Sharma, Yun William Yu

J. Am. Medical Informatics Assoc., 2021

On minimizers and convolutional filters: a partial justification for the unreasonable effectiveness of CNNs in categorical sequence analysis.

Yun William Yu

CoRR, 2021

Expected 10-anonymity of HyperLogLog sketches for federated queries of clinical data repositories.

Ziye Tao, Griffin M. Weber, Yun William Yu

Bioinform., 2021

2020

Privacy-accuracy trade-offs in noisy digital exposure notifications.

Abbas Hammoud, Yun William Yu

CoRR, 2020

Severability of mesoscale components and local time scales in dynamical networks.

Yun William Yu, Jean-Charles Delvenne, Sophia N. Yaliraki, Mauricio Barahona

CoRR, 2020

COVI White Paper.

Hannah Alsdurf, Yoshua Bengio, Tristan Deleu, Prateek Gupta, Daphne Ippolito, Richard Janda, Max Jarvie, Tyler Kolody, Sekoul Krastev, Tegan Maharaj, Robert Obryk, Dan Pilat, Valerie Pisano, Benjamin Prud'homme, Meng Qu, Nasim Rahaman, Irina Rish, Jean-Franois Rousseau, Abhinav Sharma, Brooke Struck, Jian Tang, Martin Weiss, Yun William Yu

CoRR, 2020

Contact Tracing Mobile Apps for COVID-19: Privacy Considerations and Related Trade-offs.

Hyunghoon Cho, Daphne Ippolito, Yun William Yu

CoRR, 2020

2019

Metagenomic binning through low-density hashing.

Yunan Luo, Yun William Yu, Jianyang Zeng, Bonnie Berger, Jian Peng

Bioinform., 2019

2018

Joker de Bruijn: Covering <i>k</i>-Mers Using Joker Characters.

Yaron Orenstein, Yun William Yu, Bonnie Berger

J. Comput. Biol., 2018

2017

Total Tetris: Tetris with Monominoes, Dominoes, Trominoes, Pentominoes, ...

Erik D. Demaine, Martin L. Demaine, Sarah Eisenstat, Adam Hesterberg, Andrea Lincoln, Jayson Lynch, Yun William Yu

J. Inf. Process., 2017

HyperMinHash: Jaccard index sketching in LogLog space.

Yun William Yu, Griffin M. Weber

CoRR, 2017

2016

Approximation hardness of Shortest Common Superstring variants.

Yun William Yu

CoRR, 2016

Fast genotyping of known SNPs through approximate <i>k</i>-mer matching.

Ariya Shajii, Deniz Yörükoglu, Yun William Yu, Bonnie Berger

Bioinform., 2016

2015

Entropy-scaling search of massive biological data.

Yun William Yu, Noah M. Daniels, David Christian Danko, Bonnie Berger

CoRR, 2015

2014

Traversing the k-mer Landscape of NGS Read Datasets for Quality Score Sparsification.

Yun William Yu, Deniz Yörükoglu, Bonnie Berger

Proceedings of the Research in Computational Molecular Biology, 2014