Noushin Ghaffari

According to our database, Noushin Ghaffari authored at least 18 papers between 2006 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Comparative Computational Approach for Evaluating Transposon Detection in Genomic Data.

Fatema Shormin, Noushin Ghaffari, Catherine M. Mageeney, Kelly Porter Williams

Proceedings of the Practice and Experience in Advanced Research Computing, 2023

Exploring Unsupervised Machine Learning Techniques for Genomic Island Categorization.

Noushin Ghaffari, Lijie Zhou, Catherine M. Mageeney, Kelly Porter Williams

Proceedings of the Practice and Experience in Advanced Research Computing, 2023

Workflow for Understanding the Phenotypic Characteristics of Seals by Epigenetic Analysis.

Noushin Ghaffari, Swaathi Suguna Venkatesh, Rabeya Nazara, Oluwaseyi Oladejo, Rakshith Puligundla Venugopal, Stephen J. Gaughran, Bridgett M. Vonholdt

Proceedings of the Practice and Experience in Advanced Research Computing, 2023

2018

Examining De Novo Transcriptome Assemblies via a Quality Assessment Pipeline.

Noushin Ghaffari, Osama A. Arshad, Hyundoo Jeong, John Thiltges, Michael F. Criscitiello, Byung-Jun Yoon, Aniruddha Datta, Charles D. Johnson

IEEE ACM Trans. Comput. Biol. Bioinform., 2018

2017

Optimal hybrid sequencing and assembly: Feasibility conditions for accurate genome reconstruction and cost minimization strategy.

Chun-Chi Chen, Noushin Ghaffari, Xiaoning Qian, Byung-Jun Yoon

Comput. Biol. Chem., 2017

2016

Computational Considerations in Transcriptome Assemblies and Their Evaluation, using High Quality Human RNA-Seq data.

Noushin Ghaffari, Jordi Abante, Raminder Singh, Philip D. Blood, Charles D. Johnson

Proceedings of the XSEDE16 Conference on Diversity, 2016

2014

De novo transcriptome assemblies and annotation for pacifie whiteleg shrimp.

Noushin Ghaffari, Osama A. Arshad, Hyundoo Jeong, John Thiltges, Michael F. Criscitiello, Byung-Jun Yoon, Aniruddha Datta, Charles D. Johnson

Proceedings of the 2014 IEEE Global Conference on Signal and Information Processing, 2014

2013

Modeling the Next Generation Sequencing sample processing pipeline for the purposes of classification.

Noushin Ghaffari, Mohammadmahdi R. Yousefi, Charles D. Johnson, Ivan Ivanov, Edward R. Dougherty

BMC Bioinform., 2013

2011

Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens.

Ying Wang, Noushin Ghaffari, Charles D. Johnson, Ulisses M. Braga-Neto, Hui Wang, Rui Chen, Huaijun Zhou

BMC Bioinform., 2011

A CoD-based stationary control policy for intervening in large gene regulatory networks.

Noushin Ghaffari, Ivan Ivanov, Xiaoning Qian, Edward R. Dougherty

BMC Bioinform., 2011

2010

Selection policy-induced reduction mappings for Boolean networks.

Ivan Ivanov, Plamen Simeonov, Noushin Ghaffari, Xiaoning Qian, Edward R. Dougherty

IEEE Trans. Signal Process., 2010

State reduction for network intervention in probabilistic Boolean networks.

Xiaoning Qian, Noushin Ghaffari, Ivan Ivanov, Edward R. Dougherty

Bioinform., 2010

A CoD-based reduction algorithm for designing stationary control policies on Boolean networks.

Noushin Ghaffari, Ivan Ivanov, Xiaoning Qian, Edward R. Dougherty

Bioinform., 2010

2009

Intervention in gene regulatory networks via greedy control policies based on long-run behavior.

Xiaoning Qian, Ivan Ivanov, Noushin Ghaffari, Edward R. Dougherty

BMC Syst. Biol., 2009

A CoD based reduction algorithm for Boolean and probabilistic Boolean networks.

Noushin Ghaffari, Ivan Ivanov, Edward R. Dougherty

Proceedings of the 2009 IEEE International Workshop on Genomic Signal Processing and Statistics, 2009

2007

Biomarker Discovery Across Annotated and Unannotated Microarray Datasets Using Semi-Supervised Learning.

Cole Harris, Noushin Ghaffari

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007

2006

Identifying the most significant genes from gene expression profiles for sample classification.

Hisham Al-Mubaid, Noushin Ghaffari

Proceedings of the 2006 IEEE International Conference on Granular Computing, 2006

A New Gene Selection Technique Using Feature Selection Methodology.

Noushin Ghaffari, Hisham Al-Mubaid

Proceedings of the 21st International Conference on Computers and Their Applications, 2006