Aniruddha Datta

Rodolfo S. Allendes Osorio

Proceedings of the 23rd IEEE International Conference on Bioinformatics and Bioengineering, 2023

Time Optimal Data Harvesting in Two Dimensions through Reinforcement Learning Without Engineered Reward Functions.

[BibT_eX]

[DOI]

Proceedings of the American Control Conference, 2023

2022

Integrative Network Modeling Highlights the Crucial Roles of Rho-GDI Signaling Pathway in the Progression of non-Small Cell Lung Cancer.

[BibT_eX]

[DOI]

Saransh Gupta

Haswanth Vundavilli

IEEE J. Biomed. Health Informatics, 2022

In Silico Modeling of the Induction of Apoptosis by Cryptotanshinone in Osteosarcoma Cell Lines.

[BibT_eX]

[DOI]

Heather M. Wilson-Robles

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Image Processing Pipeline to Compute Homologous Recombination Score.

[BibT_eX]

[DOI]

Proceedings of the ICBET 2022: 12th International Conference on Biomedical Engineering and Technology, Tokyo, Japan, April 20, 2022

2020

Cryptotanshinone Induces Cell Death in Lung Cancer by Targeting Aberrant Feedback Loops.

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[DOI]

IEEE J. Biomed. Health Informatics, 2020

In Silico Design and Experimental Validation of Combination Therapy for Pancreatic Cancer.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2020

A Gaussian Mixture-Model Exploiting Pathway Knowledge for Dissecting Cancer Heterogeneity.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2020

Robust Recurrent CNV Detection in the Presence of Inter-Subject Variability.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2020

2019

Bayesian Inference Identifies Combination Therapeutic Targets in Breast Cancer.

[BibT_eX]

[DOI]

IEEE Trans. Biomed. Eng., 2019

Emergence of DSS efforts in genomics: Past contributions and challenges.

[BibT_eX]

[DOI]

Arun Sen

Decis. Support Syst., 2019

2018

Understanding the Bioinformatics Challenges of Integrating Genomics Into Healthcare.

[BibT_eX]

[DOI]

IEEE J. Biomed. Health Informatics, 2018

Deep Sequencing Data Analysis.

[BibT_eX]

[DOI]

Bijoy K. Ghosh

IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Examining De Novo Transcriptome Assemblies via a Quality Assessment Pipeline.

[BibT_eX]

[DOI]

Michael F. Criscitiello

Byung-Jun Yoon

Charles D. Johnson

IEEE ACM Trans. Comput. Biol. Bioinform., 2018

A GPU-CPU heterogeneous algorithm for NGS read alignment.

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[DOI]

Sunil P. Khatri

Int. J. Comput. Biol. Drug Des., 2018

Simulating variance heterogeneity in quantitative genome wide association studies.

[BibT_eX]

[DOI]

BMC Bioinform., 2018

A Bayesian approach to determine the composition of heterogeneous cancer tissue.

[BibT_eX]

[DOI]

BMC Bioinform., 2018

Fast and efficient genotype encoding using sparse 2D bitmaps for database-driven genomics applications.

[BibT_eX]

[DOI]

Priyadharshini S. Venkatasubramani

Proceedings of the 2018 IEEE EMBS International Conference on Biomedical & Health Informatics, 2018

Bayesian Modeling of Plant Drought Resistance Pathway.

[BibT_eX]

[DOI]

Aditya Lahiri

Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017

Hypoxia Stress Response Pathways: Modeling and Targeted Therapy.

[BibT_eX]

[DOI]

Rajani Varghese

IEEE J. Biomed. Health Informatics, 2017

A Survey of Software and Hardware Approaches to Performing Read Alignment in Next Generation Sequencing.

[BibT_eX]

[DOI]

Sunil P. Khatri

IEEE ACM Trans. Comput. Biol. Bioinform., 2017

A Bayesian Network-Based Approach to Selection of Intervention Points in the Mitogen-Activated Protein Kinase Plant Defense Response Pathway.

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[DOI]

Priya S. Venkat

Krishna R. Narayanan

J. Comput. Biol., 2017

Towards targeted combinatorial therapy design for the treatment of castration-resistant prostate cancer.

[BibT_eX]

[DOI]

Osama A. Arshad

BMC Bioinform., 2017

Application of big data analytics in process safety and risk management.

[BibT_eX]

[DOI]

Pankaj Goel

M. Sam Mannan

Proceedings of the 2017 IEEE International Conference on Big Data (IEEE BigData 2017), 2017

2016

A Conjugate Exponential Model for Cancer Tissue Heterogeneity.

[BibT_eX]

[DOI]

Priyadharshini S. Venkatasubramani

IEEE J. Biomed. Health Informatics, 2016

Using Boolean Logic Modeling of Gene Regulatory Networks to Exploit the Links Between Cancer and Metabolism for Therapeutic Purposes.

[BibT_eX]

[DOI]

Osama A. Arshad

IEEE J. Biomed. Health Informatics, 2016

Measurement-based control approach for tuning PID controllers: application to induction machines.

[BibT_eX]

[DOI]

Sofiane Khadraoui

Mohamed Amine Fnaiech

J. Control. Decis., 2016

A measurement-based control design approach for efficient cancer chemotherapy.

[BibT_eX]

[DOI]

Inf. Sci., 2016

Detecting Cell Growth and Drug Response in Heterogeneous Populations: A Dynamic Imaging Approach.

[BibT_eX]

[DOI]

Proceedings of the 16th IEEE International Conference on Bioinformatics and Bioengineering, 2016

2015

Linear circuits: a measurement-based approach.

[BibT_eX]

[DOI]

Int. J. Circuit Theory Appl., 2015

2014

A Model for Cancer Tissue Heterogeneity.

[BibT_eX]

[DOI]

IEEE Trans. Biomed. Eng., 2014

State and parameter estimation for nonlinear biological phenomena modeled by S-systems.

[BibT_eX]

[DOI]

Digit. Signal Process., 2014

A model-free design of reduced-order controllers and application to a DC servomotor.

[BibT_eX]

[DOI]

Autom., 2014

Using the message passing algorithm on discrete data to detect faults in boolean regulatory networks.

[BibT_eX]

[DOI]

Algorithms Mol. Biol., 2014

A new measurement based approach to the study of biological systems.

[BibT_eX]

[DOI]

Daniel N. Mohsenizadeh

Hazem N. Nounou

Mohamed N. Nounou

Proceedings of the 6th International Symposium on Communications, 2014

A data-based approach for designing adaptive controllers for unknown systems.

[BibT_eX]

[DOI]

Proceedings of the 6th International Symposium on Communications, 2014

De novo transcriptome assemblies and annotation for pacifie whiteleg shrimp.

[BibT_eX]

[DOI]

Michael F. Criscitiello

Byung-Jun Yoon

Charles D. Johnson

Proceedings of the 2014 IEEE Global Conference on Signal and Information Processing, 2014

2013

Parameter Estimation of Biological Phenomena: An Unscented Kalman Filter Approach.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2013

Optimal Intervention in Markovian Gene Regulatory Networks With Random-Length Therapeutic Response to Antitumor Drug.

[BibT_eX]

[DOI]

IEEE Trans. Biomed. Eng., 2013

Grand Challenges in Interfacing Engineering With Life Sciences and Medicine.

[BibT_eX]

[DOI]

Melur Ramasubramanian

IEEE Trans. Biomed. Eng., 2013

A measurement-based approach for designing reduced-order controllers with guaranteed bounded error.

[BibT_eX]

[DOI]

Int. J. Control, 2013

Computational and Statistical Approaches for Modeling of Proteomic and Genomic Networks.

[BibT_eX]

[DOI]

Adv. Bioinformatics, 2013

On the modeling of heterogeneity in cancer tissue.

[BibT_eX]

[DOI]

Proceedings of the IEEE Global Conference on Signal and Information Processing, 2013

Modeling hypoxia stress response pathways.

[BibT_eX]

[DOI]

Rajani Varghese

Proceedings of the 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, 2013

Boolean model to experimental validation: A preliminary attempt.

[BibT_eX]

[DOI]

Priyadharshini S. Venkatasubramami

Proceedings of the 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, 2013

Exploiting the cancer and diabetes metabolic connection for therapeutic purposes.

[BibT_eX]

[DOI]

Osama A. Arshad

Proceedings of the 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, 2013

A model-free technique for designing fixed-order controllers.

[BibT_eX]

[DOI]

Proceedings of the 52nd IEEE Conference on Decision and Control, 2013

A measurement based approach to mechanical systems.

[BibT_eX]

[DOI]

Proceedings of the 9th Asian Control Conference, 2013

A control design method for unknown systems using frequency domain data.

[BibT_eX]

[DOI]

Proceedings of the 9th Asian Control Conference, 2013

Design of reduced-order controllers using a set of measurements: Application to a DC servomotor.

[BibT_eX]

[DOI]

Proceedings of the American Control Conference, 2013

Robust control design method for uncertain system using a set of measurements.

[BibT_eX]

[DOI]

Proceedings of the American Control Conference, 2013

A measurement-based approach for tuning of reduced-order controllers.

[BibT_eX]

[DOI]

Proceedings of the American Control Conference, 2013

2012

Optimal Intervention Strategies for Therapeutic Methods With Fixed-Length Duration of Drug Effectiveness.

[BibT_eX]

[DOI]

IEEE Trans. Signal Process., 2012

Fuzzy Intervention in Biological Phenomena.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2012

Multiscale Denoising of Biological Data: A Comparative Analysis.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2012

Generating Stochastic Gene Regulatory Networks Consistent With Pathway Information and Steady-State Behavior.

[BibT_eX]

[DOI]

Jason M. Knight

IEEE Trans. Biomed. Eng., 2012

Intervention in Biological Phenomena via Feedback Linearization.

[BibT_eX]

[DOI]

Mohamed Amine Fnaiech

Hazem N. Nounou

Mohamed N. Nounou

Adv. Bioinformatics, 2012

Optimal cancer therapy based on a tumor growth inhibition model.

[BibT_eX]

[DOI]

Proceedings of the IEEE Statistical Signal Processing Workshop, 2012

Optimal therapeutic methods with random-length response in probabilistic boolean networks.

[BibT_eX]

[DOI]

Proceedings of the Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, 2012

Determining the relative prevalence of different subpopulations in heterogeneous cancer tissue.

[BibT_eX]

[DOI]

Proceedings of the Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, 2012

A measurement based approach for linear circuit modeling and design.

[BibT_eX]

[DOI]

Proceedings of the 51th IEEE Conference on Decision and Control, 2012

Wavelet-based Multiscale Filtering of Genomic Data.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Advances in Social Networks Analysis and Mining, 2012

Boolean network model of oxidative stress response pathways.

[BibT_eX]

[DOI]

Proceedings of the American Control Conference, 2012

Output-feedback model predictive control of biological phenomena modeled by S-systems.

[BibT_eX]

[DOI]

Proceedings of the American Control Conference, 2012

2011

Intervention in Biological Phenomena Modeled by S-Systems.

[BibT_eX]

[DOI]

IEEE Trans. Biomed. Eng., 2011

Cancer therapy design based on pathway logic.

[BibT_eX]

[DOI]

Bioinform., 2011

Modeling cyclic and acyclic therapeutic methods with persistent intervention effect in probabilistic Boolean networks.

[BibT_eX]

[DOI]

Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

Modelling oxidative stress response pathways.

[BibT_eX]

[DOI]

Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

Linear circuits: A measurement based approach.

[BibT_eX]

[DOI]

Proceedings of the 20th European Conference on Circuit Theory and Design, 2011

Parameter estimation of biological phenomena modeled by S-systems: An Extended Kalman filter approach.

[BibT_eX]

[DOI]

Proceedings of the 50th IEEE Conference on Decision and Control and European Control Conference, 2011

Combination therapy design for cancer: A digital systems approach.

[BibT_eX]

[DOI]

Proceedings of the 50th IEEE Conference on Decision and Control and European Control Conference, 2011

Intervention in biological phenomena modeled by S-systems: A model predictive control approach.

[BibT_eX]

[DOI]

Proceedings of the American Control Conference, 2011

Optimal intervention strategies for cyclic therapeutic methods with fixed-length duration of effect.

[BibT_eX]

[DOI]

Proceedings of the Conference Record of the Forty Fifth Asilomar Conference on Signals, 2011

2010

Stationary and structural control in gene regulatory networks: basic concepts.

[BibT_eX]

[DOI]

Int. J. Syst. Sci., 2010

From biological pathways to regulatory networks.

[BibT_eX]

[DOI]

Proceedings of the 49th IEEE Conference on Decision and Control, 2010

2009

Bayesian robustness in the control of gene regulatory networks.

[BibT_eX]

[DOI]

IEEE Trans. Signal Process., 2009

Optimal Intervention Strategies for Cyclic Therapeutic Methods.

[BibT_eX]

[DOI]

IEEE Trans. Biomed. Eng., 2009

Intervention in Context-Sensitive Probabilistic Boolean Networks Revisited.

[BibT_eX]

[DOI]

EURASIP J. Bioinform. Syst. Biol., 2009

Adaptive intervention in probabilistic boolean networks.

[BibT_eX]

[DOI]

Bioinform., 2009

Quantification of data extraction noise in probabilistic Boolean Network modeling.

[BibT_eX]

[DOI]

Proceedings of the 2009 IEEE International Workshop on Genomic Signal Processing and Statistics, 2009

Open-Loop Feedback Intervention: Control of gene regulatory networks with unmeasurable context.

[BibT_eX]

[DOI]

Proceedings of the 2009 IEEE International Workshop on Genomic Signal Processing and Statistics, 2009

2008

Robust Intervention in Probabilistic Boolean Networks.

[BibT_eX]

[DOI]

IEEE Trans. Signal Process., 2008

Intervention in Gene Regulatory Networks via a Stationary Mean-First-Passage-Time Control Policy.

[BibT_eX]

[DOI]

IEEE Trans. Biomed. Eng., 2008

Optimal Intervention in Asynchronous Genetic Regulatory Networks.

[BibT_eX]

[DOI]

IEEE J. Sel. Top. Signal Process., 2008

Optimal Constrained Stationary Intervention in Gene Regulatory Networks.

[BibT_eX]

[DOI]

EURASIP J. Bioinform. Syst. Biol., 2008

Mean first-passage time control policy versus reinforcement-learning control policy in gene regulatory networks.

[BibT_eX]

[DOI]

Proceedings of the American Control Conference, 2008

Optimal intervention in semi-Markov-based asynchronous genetic regulatory networks.

[BibT_eX]

[DOI]

Proceedings of the American Control Conference, 2008

2006

Optimal infinite-horizon control for probabilistic Boolean networks.

[BibT_eX]

[DOI]

IEEE Trans. Signal Process., 2006

Intervention in a family of Boolean networks.

[BibT_eX]

[DOI]

Bioinform., 2006

Optimal Control in a Family of Boolean Networks.

[BibT_eX]

[DOI]

Proceedings of the 45th IEEE Conference on Decision and Control, 2006

2005

Research issues in genomic signal processing.

[BibT_eX]

[DOI]

Chao Sima

IEEE Signal Process. Mag., 2005

Generating Boolean networks with a prescribed attractor structure.

[BibT_eX]

[DOI]

Bioinform., 2005

Boolean relationships among genes responsive to ionizing radiation in the NCI 60 ACDS.

[BibT_eX]

[DOI]

Albert J. Fornace Jr.

Michael L. Bittner

Bioinform., 2005

Intervention in context-sensitive probabilistic Boolean networks.

[BibT_eX]

[DOI]

Bioinform., 2005

External control in a special class of probabilistic Boolean networks.

[BibT_eX]

[DOI]

Proceedings of the American Control Conference, 2005

Assignment of terminal penalties in controlling genetic regulatory networks.

[BibT_eX]

[DOI]

Proceedings of the American Control Conference, 2005

2004

External control in Markovian genetic regulatory networks: the imperfect information case.

[BibT_eX]

[DOI]

Bioinform., 2004

Real and complex stabilization: stability and performance.

[BibT_eX]

[DOI]

Proceedings of the 2004 American Control Conference, 2004

2003

On the stability and controller robustness of some popular PID tuning rules.

[BibT_eX]

[DOI]

IEEE Trans. Autom. Control., 2003

External Control in Markovian Genetic Regulatory Networks.

[BibT_eX]

[DOI]

Mach. Learn., 2003

PID stabilization of LTI plants with time-delay.

[BibT_eX]

[DOI]

Hao Xu

S. P. Bhattacharyya

Proceedings of the 42nd IEEE Conference on Decision and Control, 2003

Application of dynamic programming in genetic regulatory networks.

[BibT_eX]

[DOI]

Proceedings of the 42nd IEEE Conference on Decision and Control, 2003

2002

New results on the synthesis of PID controllers.

[BibT_eX]

[DOI]

IEEE Trans. Autom. Control., 2002

Robust control design using the PID controller.

[BibT_eX]

[DOI]

S. P. Bhattacharyya

Proceedings of the 41st IEEE Conference on Decision and Control, 2002

Plant-robust and controller-robust discrete-time PID design.

[BibT_eX]

[DOI]

Hao Xu

Proceedings of the American Control Conference, 2002

PID tuning revisited: guaranteed stability and non-fragility.

[BibT_eX]

[DOI]

Proceedings of the American Control Conference, 2002

2001

Computation of all stabilizing PID gains for digital control systems.

[BibT_eX]

[DOI]

Hao Xu

IEEE Trans. Autom. Control., 2001

PI stabilization of first-order systems with time delay.

[BibT_eX]

[DOI]

Autom., 2001

Controller design via Pade approximation can lead to instability.

[BibT_eX]

[DOI]

Proceedings of the 40th IEEE Conference on Decision and Control, 2001

Adaptive model algorithmic control.

[BibT_eX]

[DOI]

Lei Xing

Proceedings of the American Control Conference, 2001

Determination of stabilizing feedback gains for second-order systems with time delay.

[BibT_eX]

[DOI]

Proceedings of the American Control Conference, 2001

Stabilization of first-order systems with time delay using the PID controller.

[BibT_eX]

[DOI]

Proceedings of the American Control Conference, 2001

2000

Stabilization of time delay systems.

[BibT_eX]

[DOI]

S. P. Bhattacharyya

Proceedings of the American Control Conference, 2000

1999

Adaptive internal model control: H<sub>∞</sub> optimization for stable plants.

[BibT_eX]

[DOI]

Lei Xing

IEEE Trans. Autom. Control., 1999

1998

An elementary derivation of the Routh-Hurwitz criterion.

[BibT_eX]

[DOI]

Ming-Tzu Ho

IEEE Trans. Autom. Control., 1998

Adaptive internal model control: H<sub>2</sub> optimization for stable plants.

[BibT_eX]

[DOI]

James Ochoa

Autom., 1998

1996

A modified model reference adaptive control scheme for rigid robots.

[BibT_eX]

[DOI]

Ming-Tzu Ho

IEEE Trans. Robotics Autom., 1996

On a quantitative theory of robust adaptive control: an interval plant approach.

[BibT_eX]

[DOI]

IEEE Trans. Autom. Control., 1996

Adaptive internal model control: Design and stability analysis.

[BibT_eX]

[DOI]

James Ochoa

Autom., 1996

1994

Performance analysis and improvement in model reference adaptive control.

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[DOI]

Petros A. Ioannou

IEEE Trans. Autom. Control., 1994

On modifying model reference adaptive control schemes for performance improvement.

[BibT_eX]

[DOI]

Ming-Tzu Ho

IEEE Trans. Autom. Control., 1994

On the transient behaviour in discrete-time model reference adaptive control: Analysis and possible improvement.

[BibT_eX]

[DOI]

Autom., 1994

1993

Robustness of discrete-time adaptive controllers: an input-output approach.

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[DOI]

IEEE Trans. Autom. Control., 1993

Performance improvement in decentralized adaptive control: a modified model reference scheme.

[BibT_eX]

[DOI]

IEEE Trans. Autom. Control., 1993

1991

Robust adaptive control: a unified approach.

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[DOI]

Petros A. Ioannou