Olaf Ronneberger

Affiliations:
  • Google DeepMind, London, UK
  • University of Freiburg, Germany


According to our database1, Olaf Ronneberger authored at least 64 papers between 2002 and 2021.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Links

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Bibliography

2021
Inferring a Continuous Distribution of Atom Coordinates from Cryo-EM Images using VAEs.
CoRR, 2021

The Medical Segmentation Decathlon.
CoRR, 2021

2020
Contrastive Training for Improved Out-of-Distribution Detection.
CoRR, 2020

2019
A Hierarchical Probabilistic U-Net for Modeling Multi-Scale Ambiguities.
CoRR, 2019

A large annotated medical image dataset for the development and evaluation of segmentation algorithms.
CoRR, 2019

2018
Deep learning to achieve clinically applicable segmentation of head and neck anatomy for radiotherapy.
CoRR, 2018

A Probabilistic U-Net for Segmentation of Ambiguous Images.
Proceedings of the Advances in Neural Information Processing Systems 31: Annual Conference on Neural Information Processing Systems 2018, 2018

ISOODL: Instance segmentation of overlapping biological objects using deep learning.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

2017
Gland segmentation in colon histology images: The glas challenge contest.
Medical Image Anal., 2017

Spatiotemporal Deformable Prototypes for Motion Anomaly Detection.
Int. J. Comput. Vis., 2017

Invited Talk: U-Net Convolutional Networks for Biomedical Image Segmentation.
Proceedings of the Bildverarbeitung für die Medizin 2017 - Algorithmen - Systeme, 2017

2016
A benchmark for comparison of dental radiography analysis algorithms.
Medical Image Anal., 2016

Automated analysis of retinal imaging using machine learning techniques for computer vision.
F1000Research, 2016

Applying machine learning to automated segmentation of head and neck tumour volumes and organs at risk on radiotherapy planning CT and MRI scans.
F1000Research, 2016

3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

2015
Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: The CADDementia challenge.
NeuroImage, 2015

U-Net: Convolutional Networks for Biomedical Image Segmentation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015 - 18th International Conference Munich, Germany, October 5, 2015

Cell segmentation and tracking in phase contrast images using graph cut with asymmetric boundary costs.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

Spatiotemporal Deformable Prototypes for Motion Anomaly Detection.
Proceedings of the British Machine Vision Conference 2015, 2015

2014
Correction of inter-scanner and within-subject variance in structural MRI based automated diagnosing.
NeuroImage, 2014

Rotation-Invariant HOG Descriptors Using Fourier Analysis in Polar and Spherical Coordinates.
Int. J. Comput. Vis., 2014

Reduction of confounding effects with voxel-wise Gaussian process regression in structural MRI.
Proceedings of the International Workshop on Pattern Recognition in Neuroimaging, 2014

Optical flow guided cell segmentation and tracking in developing tissue.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

Accurate Detection in Volumetric Images Using Elastic Registration Based Validation.
Proceedings of the Pattern Recognition - 36th German Conference, 2014

Improving Detection of Deformable Objects in Volumetric Data.
Proceedings of the British Machine Vision Conference, 2014

2013
Variational attenuation correction in two-view confocal microscopy.
BMC Bioinform., 2013

Variational attenuation correction of two-view confocal microscopic recordings.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Joint 3D cell segmentation and classification in the Arabidopsis root using energy minimization and shape priors.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Discriminative Detection and Alignment in Volumetric Data.
Proceedings of the Pattern Recognition - 35th German Conference, 2013

Blind Deconvolution of Widefield Fluorescence Microscopic Data by Regularization of the Optical Transfer Function (OTF).
Proceedings of the 2013 IEEE Conference on Computer Vision and Pattern Recognition, 2013

2012
Multiview Deblurring for 3-D Images from Light-Sheet-Based Fluorescence Microscopy.
IEEE Trans. Image Process., 2012

Fast Rotation Invariant 3D Feature Computation Utilizing Efficient Local Neighborhood Operators.
IEEE Trans. Pattern Anal. Mach. Intell., 2012

Blind deconvolution with PSF regularization for wide-field microscopy.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

Modeling of Sparsely Sampled Tubular Surfaces Using Coupled Curves.
Proceedings of the Pattern Recognition, 2012

2D/3D rotation-invariant detection using equivariant filters and kernel weighted mapping.
Proceedings of the 2012 IEEE Conference on Computer Vision and Pattern Recognition, 2012

2011
A comparison of different automated methods for the detection of white matter lesions in MRI data.
NeuroImage, 2011

Spatially-variant Lucy-Richardson deconvolution for multiview fusion of microscopical 3D images.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Spherical Bessel Filter for 3D object detection.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Reusable modules for high-content 3D and 4D image analysis.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Alpha helix prediction based on Metropolis-Hastings sampling.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Hierarchical Markov Random Fields for mast cell segmentation in electron microscopic recordings.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

3D Rotation-Invariant Description from Tensor Operation on Spherical HOG Field.
Proceedings of the British Machine Vision Conference, 2011

2010
Harmonic Filters for 3D Multichannel Data: Rotation Invariant Detection of Mitoses in Colorectal Cancer.
IEEE Trans. Medical Imaging, 2010

3D Deformable Surfaces with Locally Self-Adjusting Parameters - A Robust Method to Determine Cell Nucleus Shapes.
Proceedings of the 20th International Conference on Pattern Recognition, 2010

Mean Shift Gradient Vector Flow: A Robust External Force Field for 3D Active Surfaces.
Proceedings of the 20th International Conference on Pattern Recognition, 2010

3D Object Detection Using a Fast Voxel-Wise Local Spherical Fourier Tensor Transformation.
Proceedings of the Pattern Recognition, 2010

Semi-supervised Learning of Edge Filters for Volumetric Image Segmentation.
Proceedings of the Pattern Recognition, 2010

2009
Rotational Invariance Based on Fourier Analysis in Polar and Spherical Coordinates.
IEEE Trans. Pattern Anal. Mach. Intell., 2009

A 3D Active Surface Model for the Accurate Segmentation of <i>Drosophila</i> Schneider Cell Nuclei and Nucleoli.
Proceedings of the Advances in Visual Computing, 5th International Symposium, 2009

Image Analysis of Arabidopsis Trichome Patterning in 4D Confocal Datasets.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

Fast computation of 3D spherical Fourier harmonic descriptors - a complete orthonormal basis for a rotational invariant representation of three-dimensional objects.
Proceedings of the 12th IEEE International Conference on Computer Vision Workshops, 2009

Using Lateral Coupled Snakes for Modeling the Contours of Worms.
Proceedings of the Pattern Recognition, 2009

Increasing the Dimension of Creativity in Rotation Invariant Feature Design Using 3D Tensorial Harmonics.
Proceedings of the Pattern Recognition, 2009

2008
Fast and robust segmentation of spherical particles in volumetric data sets from brightfield microscopy.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

2007
3D-Invarianten zur automatischen Pollenerkennung [3D Invariants for Automated Pollen Recognition].
Proceedings of the Ausgezeichnete Informatikdissertationen 2007, 2007

3D Invariants with High Robustness to Local Deformations for Automated Pollen Recognition.
Proceedings of the Pattern Recognition, 2007

A Fast and Reliable Coin Recognition System.
Proceedings of the Pattern Recognition, 2007

Holomorphic Filters for Object Detection.
Proceedings of the Pattern Recognition, 2007

3D invariants for automated pollen recognition.
PhD thesis, 2007

2006
Fast Scalar and Vectorial Grayscale Based Invariant Features for 3D Cell Nuclei Localization and Classification.
Proceedings of the Pattern Recognition, 2006

Identifikation von Zellen in intaktem Gewebe.
Proceedings of the Bildverarbeitung für die Medizin 2006, Algorithmen, Systeme, Anwendungen, Proceedings des Workshops vom 19., 2006

2005
Voxel-Wise Gray Scale Invariants for Simultaneous Segmentation and Classification.
Proceedings of the Pattern Recognition, 27th DAGM Symposium, Vienna, Austria, August 31, 2005

Self-learning Segmentation and Classification of Cell-Nuclei in 3D Volumetric Data Using Voxel-Wise Gray Scale Invariants.
Proceedings of the Pattern Recognition, 27th DAGM Symposium, Vienna, Austria, August 31, 2005

2002
General-Purpose Object Recognition in 3D Volume Data Sets Using Gray-Scale Invariants --- Classification of Airborne Pollen-Grains Recorded with a Confocal Laser Scanning Microscope.
Proceedings of the 16th International Conference on Pattern Recognition, 2002


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