Sébastien Ourselin

According to our database1, Sébastien Ourselin authored at least 361 papers between 2000 and 2019.

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Bibliography

2019
Inference of Cerebrovascular Topology With Geodesic Minimum Spanning Trees.
IEEE Trans. Med. Imaging, 2019

Evaluation of Haptic Feedback on Bimanually Teleoperated Laparoscopy for Endometriosis Surgery.
IEEE Trans. Biomed. Engineering, 2019

DeepIGeoS: A Deep Interactive Geodesic Framework for Medical Image Segmentation.
IEEE Trans. Pattern Anal. Mach. Intell., 2019

Probabilistic disease progression modeling to characterize diagnostic uncertainty: Application to staging and prediction in Alzheimer's disease.
NeuroImage, 2019

Training recurrent neural networks robust to incomplete data: Application to Alzheimer's disease progression modeling.
Medical Image Analysis, 2019

GAS: A genetic atlas selection strategy in multi-atlas segmentation framework.
Medical Image Analysis, 2019

Aleatoric uncertainty estimation with test-time augmentation for medical image segmentation with convolutional neural networks.
Neurocomputing, 2019

Interactive virtual 3D models of renal cancer patient anatomies alter partial nephrectomy surgical planning decisions and increase surgeon confidence compared to volume-rendered images.
Int. J. Comput. Assist. Radiol. Surg., 2019

PADDIT: Probabilistic Augmentation of Data using Diffeomorphic Image Transformation.
Proceedings of the Medical Imaging 2019: Image Processing, 2019

3D multirater RCNN for multimodal multiclass detection and characterisation of extremely small objects.
Proceedings of the International Conference on Medical Imaging with Deep Learning, 2019

MRI k-Space Motion Artefact Augmentation: Model Robustness and Task-Specific Uncertainty.
Proceedings of the International Conference on Medical Imaging with Deep Learning, 2019

Learning joint lesion and tissue segmentation from task-specific hetero-modal datasets.
Proceedings of the International Conference on Medical Imaging with Deep Learning, 2019

A Framework For Memory Performance Prediction From Brain Volume In Preterm-Born Adolescents.
Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019

Robotic Control of a Multi-Modal Rigid Endoscope Combining Optical Imaging with All-Optical Ultrasound.
Proceedings of the International Conference on Robotics and Automation, 2019

2018
Interactive Medical Image Segmentation Using Deep Learning With Image-Specific Fine Tuning.
IEEE Trans. Med. Imaging, 2018

Model-Based Learning for Accelerated, Limited-View 3-D Photoacoustic Tomography.
IEEE Trans. Med. Imaging, 2018

Articulated Multi-Instrument 2-D Pose Estimation Using Fully Convolutional Networks.
IEEE Trans. Med. Imaging, 2018

3-D Pose Estimation of Articulated Instruments in Robotic Minimally Invasive Surgery.
IEEE Trans. Med. Imaging, 2018

Handheld Real-Time LED-Based Photoacoustic and Ultrasound Imaging System for Accurate Visualization of Clinical Metal Needles and Superficial Vasculature to Guide Minimally Invasive Procedures.
Sensors, 2018

Relative Pose Estimation From Image Correspondences Under a Remote Center of Motion Constraint.
IEEE Robotics and Automation Letters, 2018

From a Disposable Ureteroscope to an Active Lightweight Fetoscope - Characterization and Usability Evaluation.
IEEE Robotics and Automation Letters, 2018

Susceptibility of brain atrophy to TRIB3 in Alzheimer's disease, evidence from functional prioritization in imaging genetics.
Proc. Natl. Acad. Sci. U.S.A., 2018

NiftyPET: a High-throughput Software Platform for High Quantitative Accuracy and Precision PET Imaging and Analysis.
Neuroinformatics, 2018

Volumetric reconstruction from printed films: Enabling 30 year longitudinal analysis in MR neuroimaging.
NeuroImage, 2018

A Survey of Methods for 3D Histology Reconstruction.
Medical Image Analysis, 2018

Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections.
Medical Image Analysis, 2018

Weakly-supervised convolutional neural networks for multimodal image registration.
Medical Image Analysis, 2018

NiftyNet: a deep-learning platform for medical imaging.
Computer Methods and Programs in Biomedicine, 2018

Towards computer-assisted TTTS: Laser ablation detection for workflow segmentation from fetoscopic video.
Int. J. Comput. Assist. Radiol. Surg., 2018

In vivo estimation of target registration errors during augmented reality laparoscopic surgery.
Int. J. Comput. Assist. Radiol. Surg., 2018

Retrieval and registration of long-range overlapping frames for scalable mosaicking of in vivo fetoscopy.
Int. J. Comput. Assist. Radiol. Surg., 2018

A mixed-reality surgical trainer with comprehensive sensing for fetal laser minimally invasive surgery.
Int. J. Comput. Assist. Radiol. Surg., 2018

Automatic segmentation of stereoelectroencephalography (SEEG) electrodes post-implantation considering bending.
Int. J. Comput. Assist. Radiol. Surg., 2018

An Adaptive Sampling Scheme to Efficiently Train Fully Convolutional Networks for Semantic Segmentation.
Proceedings of the Medical Image Understanding and Analysis - 22nd Conference, 2018

Imaging biomarkers for the diagnosis of Prion disease.
Proceedings of the Medical Imaging 2018: Image Processing, 2018

A log-Euclidean and total variation based variational framework for computational sonography.
Proceedings of the Medical Imaging 2018: Image Processing, 2018

Technical note: probabilistic visual and electromagnetic data fusion for robust drift-free sequential mosaicking. Application to fetoscopy.
Proceedings of the Medical Imaging 2018: Image-Guided Procedures, 2018

Automatic Brain Tumor Segmentation Using Convolutional Neural Networks with Test-Time Augmentation.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2018

Thalamic Nuclei Segmentation Using Tractography, Population-Specific Priors and Local Fibre Orientation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Short Acquisition Time PET/MR Pharmacokinetic Modelling Using CNNs.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Large-Scale Mammography CAD with Deformable Conv-Nets.
Proceedings of the Image Analysis for Moving Organ, Breast, and Thoracic Images, 2018

Elastic Registration of Geodesic Vascular Graphs.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Deep Boosted Regression for MR to CT Synthesis.
Proceedings of the Simulation and Synthesis in Medical Imaging, 2018

Cardiac Cycle Estimation for BOLD-fMRI.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Neural Activation Estimation in Brain Networks During Task and Rest Using BOLD-fMRI.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

A Machine Learning Approach to Predict Instrument Bending in Stereotactic Neurosurgery.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Computational Modelling of Pathogenic Protein Behaviour-Governing Mechanisms in the Brain.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

An Automated Localization, Segmentation and Reconstruction Framework for Fetal Brain MRI.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Towards Safe Deep Learning: Accurately Quantifying Biomarker Uncertainty in Neural Network Predictions.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Registration of MRI and iUS Data to Compensate Brain Shift Using a Symmetric Block-Matching Based Approach.
Proceedings of the Simulation, Image Processing, and Ultrasound Systems for Assisted Diagnosis and Navigation, 2018

Uncertainty in Multitask Learning: Joint Representations for Probabilistic MR-only Radiotherapy Planning.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

MRI Measurement of Placental Perfusion and Fetal Blood Oxygen Saturation in Normal Pregnancy and Placental Insufficiency.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

A Probabilistic Model Combining Deep Learning and Multi-atlas Segmentation for Semi-automated Labelling of Histology.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Deep Convolutional Filtering for Spatio-Temporal Denoising and Artifact Removal in Arterial Spin Labelling MRI.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Gaussian Processes with optimal kernel construction for neuro-degenerative clinical onset prediction.
Proceedings of the Medical Imaging 2018: Computer-Aided Diagnosis, 2018

Forward-backward splitting in deformable image registration: A demons approach.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Requirements Based Design and End-to-End Dynamic Modeling of a Robotic Tool for Vitreoretinal Surgery.
Proceedings of the 2018 IEEE International Conference on Robotics and Automation, 2018

Towards Modelling Multi-Arm Robots: Eccentric Arrangement of Concentric Tubes.
Proceedings of the 7th IEEE International Conference on Biomedical Robotics and Biomechatronics, 2018

2017
Direct Parametric Reconstruction With Joint Motion Estimation/Correction for Dynamic Brain PET Data.
IEEE Trans. Med. Imaging, 2017

A Continuum Robot and Control Interface for Surgical Assist in Fetoscopic Interventions.
IEEE Robotics and Automation Letters, 2017

Spinal cord grey matter segmentation challenge.
NeuroImage, 2017

A multi-centre evaluation of eleven clinically feasible brain PET/MRI attenuation correction techniques using a large cohort of patients.
NeuroImage, 2017

Investigating the maturation of microstructure and radial orientation in the preterm human cortex with diffusion MRI.
NeuroImage, 2017

Longitudinal multiple sclerosis lesion segmentation: Resource and challenge.
NeuroImage, 2017

Longitudinal segmentation of age-related white matter hyperintensities.
Medical Image Analysis, 2017

The 19th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI 2016).
Medical Image Analysis, 2017

Comparison of In Vivo and Ex Vivo MRI for the Detection of Structural Abnormalities in a Mouse Model of Tauopathy.
Front. Neuroinform., 2017

GIFT-Cloud: A data sharing and collaboration platform for medical imaging research.
Computer Methods and Programs in Biomedicine, 2017

Automated multiple trajectory planning algorithm for the placement of stereo-electroencephalography (SEEG) electrodes in epilepsy treatment.
Int. J. Comput. Assist. Radiol. Surg., 2017

Anatomy-driven multiple trajectory planning (ADMTP) of intracranial electrodes for epilepsy surgery.
Int. J. Comput. Assist. Radiol. Surg., 2017

Guest editorial of the IJCARS MICCAI 2016 special issue.
Int. J. Comput. Assist. Radiol. Surg., 2017

On pattern selection for laparoscope calibration.
Proceedings of the Medical Imaging 2017: Image-Guided Procedures, 2017

Ultrasonic Needle Tracking with a Fibre-Optic Ultrasound Transmitter for Guidance of Minimally Invasive Fetal Surgery.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Automatic Brain Tumor Segmentation Using Cascaded Anisotropic Convolutional Neural Networks.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2017

Generalised Dice Overlap as a Deep Learning Loss Function for Highly Unbalanced Segmentations.
Proceedings of the Deep Learning in Medical Image Analysis and Multimodal Learning for Clinical Decision Support, 2017

Short Acquisition Time PET Quantification Using MRI-Based Pharmacokinetic Parameter Synthesis.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Joint Multimodal Segmentation of Clinical CT and MR from Hip Arthroplasty Patients.
Proceedings of the Computational Methods and Clinical Applications in Musculoskeletal Imaging, 2017

Anatomy-Driven Modelling of Spatial Correlation for Regularisation of Arterial Spin Labelling Images.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Generalised Wasserstein Dice Score for Imbalanced Multi-class Segmentation Using Holistic Convolutional Networks.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2017

Scalable Multimodal Convolutional Networks for Brain Tumour Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Individual Analysis of Molecular Brain Imaging Data Through Automatic Identification of Abnormality Patterns.
Proceedings of the Molecular Imaging, Reconstruction and Analysis of Moving Body Organs, and Stroke Imaging and Treatment, 2017

Body wall force sensor for simulated minimally invasive surgery: Application to fetal surgery.
Proceedings of the 2017 IEEE/RSJ International Conference on Intelligent Robots and Systems, 2017

ToolNet: Holistically-nested real-time segmentation of robotic surgical tools.
Proceedings of the 2017 IEEE/RSJ International Conference on Intelligent Robots and Systems, 2017

VTrails: Inferring Vessels with Geodesic Connectivity Trees.
Proceedings of the Information Processing in Medical Imaging, 2017

On the Compactness, Efficiency, and Representation of 3D Convolutional Networks: Brain Parcellation as a Pretext Task.
Proceedings of the Information Processing in Medical Imaging, 2017

Corner-Based Geometric Calibration of Multi-focus Plenoptic Cameras.
Proceedings of the IEEE International Conference on Computer Vision, 2017

Refractive Structure-from-Motion Through a Flat Refractive Interface.
Proceedings of the IEEE International Conference on Computer Vision, 2017

2016
PET Reconstruction With an Anatomical MRI Prior Using Parallel Level Sets.
IEEE Trans. Med. Imaging, 2016

Maximum-Likelihood Joint Image Reconstruction/Motion Estimation in Attenuation-Corrected Respiratory Gated PET/CT Using a Single Attenuation Map.
IEEE Trans. Med. Imaging, 2016

Evaluation of Six Registration Methods for the Human Abdomen on Clinically Acquired CT.
IEEE Trans. Biomed. Engineering, 2016

NiftyFit: a Software Package for Multi-parametric Model-Fitting of 4D Magnetic Resonance Imaging Data.
Neuroinformatics, 2016

A multi-time-point modality-agnostic patch-based method for lesion filling in multiple sclerosis.
NeuroImage, 2016

Slic-Seg: A minimally interactive segmentation of the placenta from sparse and motion-corrupted fetal MRI in multiple views.
Medical Image Analysis, 2016

From computer-assisted intervention research to clinical impact: The need for a holistic approach.
Medical Image Analysis, 2016

Spatial calibration of a 2D/3D ultrasound using a tracked needle.
Int. J. Comput. Assist. Radiol. Surg., 2016

Hand-eye calibration for rigid laparoscopes using an invariant point.
Int. J. Comput. Assist. Radiol. Surg., 2016

Combined 2D and 3D tracking of surgical instruments for minimally invasive and robotic-assisted surgery.
Int. J. Comput. Assist. Radiol. Surg., 2016

Automatic segmentation of 4D cardiac MR images for extraction of ventricular chambers using a spatio-temporal approach.
Proceedings of the Medical Imaging 2016: Image Processing, 2016

Fitting parametric models of diffusion MRI in regions of partial volume.
Proceedings of the Medical Imaging 2016: Image Processing, 2016

Real-time mosaicing of fetoscopic videos using SIFT.
Proceedings of the Medical Imaging 2016: Image-Guided Procedures, Robotic Interventions, and Modeling, San Diego, California, United States, 27 February, 2016

Strengths and Pitfalls of Whole-Heart Atlas-Based Segmentation in Congenital Heart Disease Patients.
Proceedings of the Reconstruction, Segmentation, and Analysis of Medical Images, 2016

3D Ultrasonic Needle Tracking with a 1.5D Transducer Array for Guidance of Fetal Interventions.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

Dynamically Balanced Online Random Forests for Interactive Scribble-Based Segmentation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

Efficient Anatomy Driven Automated Multiple Trajectory Planning for Intracranial Electrode Implantation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

ASL-incorporated Pharmacokinetic Modelling of PET Data With Reduced Acquisition Time: Application to Amyloid Imaging.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

Fully Automated Patch-Based Image Restoration: Application to Pathology Inpainting.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2016

Optimisation of Arterial Spin Labelling Using Bayesian Experimental Design.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

Longitudinal Analysis of the Preterm Cortex Using Multi-modal Spectral Matching.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

Bilateral Weighted Adaptive Local Similarity Measure for Registration in Neurosurgery.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

Real-Time Segmentation of Non-rigid Surgical Tools Based on Deep Learning and Tracking.
Proceedings of the Computer-Assisted and Robotic Endoscopy - Third International Workshop, 2016

Point-Spread-Function-Aware Slice-to-Volume Registration: Application to Upper Abdominal MRI Super-Resolution.
Proceedings of the Reconstruction, Segmentation, and Analysis of Medical Images, 2016

Beyond the Resolution Limit: Diffusion Parameter Estimation in Partial Volume.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

Spatio-Temporal Shape Analysis of Cross-Sectional Data for Detection of Early Changes in Neurodegenerative Disease.
Proceedings of the Spectral and Shape Analysis in Medical Imaging, 2016

Joint Segmentation and CT Synthesis for MRI-only Radiotherapy Treatment Planning.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

A Multi-resolution Multi-model Method for Coronary Centerline Extraction Based on Minimal Path.
Proceedings of the Medical Imaging and Augmented Reality - 7th International Conference, 2016

Partial least squares modelling for imaging-genetics in Alzheimer's disease: Plausibility and generalization.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

Similarity Registration Problems for 2D/3D Ultrasound Calibration.
Proceedings of the Computer Vision - ECCV 2016, 2016

A Combined EM and Visual Tracking Probabilistic Model for Robust Mosaicking: Application to Fetoscopy.
Proceedings of the 2016 IEEE Conference on Computer Vision and Pattern Recognition Workshops, 2016

2015
Benchmark for Algorithms Segmenting the Left Atrium From 3D CT and MRI Datasets.
IEEE Trans. Med. Imaging, 2015

Bayesian Model Selection for Pathological Neuroimaging Data Applied to White Matter Lesion Segmentation.
IEEE Trans. Med. Imaging, 2015

Geodesic Information Flows: Spatially-Variant Graphs and Their Application to Segmentation and Fusion.
IEEE Trans. Med. Imaging, 2015

Estimating anatomical trajectories with Bayesian mixed-effects modeling.
NeuroImage, 2015

In vivo imaging of tau pathology using multi-parametric quantitative MRI.
NeuroImage, 2015

Effects of changing from non-accelerated to accelerated MRI for follow-up in brain atrophy measurement.
NeuroImage, 2015

Longitudinal measurement of the developing grey matter in preterm subjects using multi-modal MRI.
NeuroImage, 2015

Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge.
NeuroImage, 2015

Voxelwise atlas rating for computer assisted diagnosis: Application to congenital heart diseases of the great arteries.
Medical Image Analysis, 2015

A simulation system for biomarker evolution in neurodegenerative disease.
Medical Image Analysis, 2015

Probabilistic non-linear registration with spatially adaptive regularisation.
Medical Image Analysis, 2015

Right ventricle segmentation from cardiac MRI: A collation study.
Medical Image Analysis, 2015

Stability, structure and scale: improvements in multi-modal vessel extraction for SEEG trajectory planning.
Int. J. Comput. Assist. Radiol. Surg., 2015

Locally rigid, vessel-based registration for laparoscopic liver surgery.
Int. J. Comput. Assist. Radiol. Surg., 2015

Simulated field maps for susceptibility artefact correction in interventional MRI.
Int. J. Comput. Assist. Radiol. Surg., 2015

Detection and modelling of contacts in explicit finite-element simulation of soft tissue biomechanics.
Int. J. Comput. Assist. Radiol. Surg., 2015

NiftySim: A GPU-based nonlinear finite element package for simulation of soft tissue biomechanics.
Int. J. Comput. Assist. Radiol. Surg., 2015

The NifTK software platform for image-guided interventions: platform overview and NiftyLink messaging.
Int. J. Comput. Assist. Radiol. Surg., 2015

Bolstering Heuristics for Statistical Validation of Prediction Algorithms.
Proceedings of the 2015 International Workshop on Pattern Recognition in NeuroImaging, 2015

Automatic assessment of volume asymmetries applied to hip abductor muscles in patients with hip arthroplasty.
Proceedings of the Medical Imaging 2015: Image Processing, 2015

Accuracy validation of an image guided laparoscopy system for liver resection.
Proceedings of the Medical Imaging 2015: Image-Guided Procedures, 2015

Interventional Photoacoustic Imaging of the Human Placenta with Ultrasonic Tracking for Minimally Invasive Fetal Surgeries.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

Slic-Seg: Slice-by-Slice Segmentation Propagation of the Placenta in Fetal MRI Using One-Plane Scribbles and Online Learning.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015 - 18th International Conference Munich, Germany, October 5, 2015

A Registration Approach to Endoscopic Laser Speckle Contrast Imaging for Intrauterine Visualisation of Placental Vessels.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

Measuring Cortical Neurite-Dispersion and Perfusion in Preterm-Born Adolescents Using Multi-modal MRI.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015 - 18th International Conference Munich, Germany, October 5, 2015

Grey Matter Sublayer Thickness Estimation in the Mouse Cerebellum.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015 - 18th International Conference Munich, Germany, October 5, 2015

Database-Based Estimation of Liver Deformation under Pneumoperitoneum for Surgical Image-Guidance and Simulation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

Scale Factor Point Spread Function Matching: Beyond Aliasing in Image Resampling.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

Subject-specific Models for the Analysis of Pathological FDG PET Data.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

Robust CT Synthesis for Radiotherapy Planning: Application to the Head and Neck Region.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

Papillary Muscle Segmentation from a Multi-atlas Database: A Feasibility Study.
Proceedings of the Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges, 2015

Image Based Surgical Instrument Pose Estimation with Multi-class Labelling and Optical Flow.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

Multi-atlas synthesis for computer assisted diagnosis: Application to cardiovascular diseases.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

A multi-path approach to histology volume reconstruction.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

Practical PET respiratory motion correction in clinical simultaneous PET/MR.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

Fluidic actuation for intra-operative in situ imaging.
Proceedings of the 2015 IEEE/RSJ International Conference on Intelligent Robots and Systems, 2015

Multiple Orderings of Events in Disease Progression.
Proceedings of the Information Processing in Medical Imaging, 2015

Efficient Gaussian Process-Based Modelling and Prediction of Image Time Series.
Proceedings of the Information Processing in Medical Imaging, 2015

Detail-Preserving PET Reconstruction with Sparse Image Representation and Anatomical Priors.
Proceedings of the Information Processing in Medical Imaging, 2015

A Riemannian Framework for Intrinsic Comparison of Closed Genus-Zero Shapes.
Proceedings of the Information Processing in Medical Imaging, 2015

Template-Based Multimodal Joint Generative Model of Brain Data.
Proceedings of the Information Processing in Medical Imaging, 2015

Improving MRI Brain Image Classification with Anatomical Regional Kernels.
Proceedings of the Machine Learning Meets Medical Imaging - First International Workshop, 2015

Modelling Non-stationary and Non-separable Spatio-Temporal Changes in Neurodegeneration via Gaussian Process Convolution.
Proceedings of the Machine Learning Meets Medical Imaging - First International Workshop, 2015

2014
A Nonlinear Biomechanical Model Based Registration Method for Aligning Prone and Supine MR Breast Images.
IEEE Trans. Med. Imaging, 2014

Efficient Determination of the Uncertainty for the Optimization of SPECT System Design: A Subsampled Fisher Information Matrix.
IEEE Trans. Med. Imaging, 2014

Attenuation Correction Synthesis for Hybrid PET-MR Scanners: Application to Brain Studies.
IEEE Trans. Med. Imaging, 2014

Automated Template-Based Hippocampal Segmentations from MRI: The Effects of 1.5T or 3T Field Strength on Accuracy.
Neuroinformatics, 2014

Preterm birth affects the developmental synergy between cortical folding and cortical connectivity observed on multimodal MRI.
NeuroImage, 2014

MRI to X-ray mammography intensity-based registration with simultaneous optimisation of pose and biomechanical transformation parameters.
Medical Image Analysis, 2014

Susceptibility artefact correction using dynamic graph cuts: Application to neurosurgery.
Medical Image Analysis, 2014

An Oblique Approach to Prediction of Conversion to Alzheimer's Disease with Multikernel Gaussian Processes.
Proceedings of the Machine Learning and Interpretation in Neuroimaging, 2014

Bilayered anatomically constrained split-and-merge expectation maximisation algorithm (BiASM) for brain segmentation.
Proceedings of the Medical Imaging 2014: Image Processing, 2014

A symmetric block-matching framework for global registration.
Proceedings of the Medical Imaging 2014: Image Processing, 2014

Multi-modal pharmacokinetic modelling for DCE-MRI: using diffusion weighted imaging to constrain the local arterial input function.
Proceedings of the Medical Imaging 2014: Image Processing, 2014

SEEG Trajectory Planning: Combining Stability, Structure and Scale in Vessel Extraction.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Bayesian Model Selection for Pathological Data.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

A Modality-Agnostic Patch-Based Technique for Lesion Filling in Multiple Sclerosis.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Prefrontal Cortical Folding of the Preterm Brain: A Longitudinal Analysis of Preterm-Born Neonates.
Proceedings of the Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data, 2014

Simulating Neurodegeneration through Longitudinal Population Analysis of Structural and Diffusion Weighted MRI Data.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

The Empirical Variance Estimator for Computer Aided Diagnosis: Lessons for Algorithm Validation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Multi-modal Measurement of the Myelin-to-Axon Diameter g-ratio in Preterm-born Neonates and Adult Controls.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Joint Parametric Reconstruction and Motion Correction Framework for Dynamic PET Data.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Longitudinal Measurement of the Developing Thalamus in the Preterm Brain Using Multi-modal MRI.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Multi-scale Analysis of Imaging Features and Its Use in the Study of COPD Exacerbation Susceptible Phenotypes.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Multi-atlas based pathological stratification of D-TGA congenital heart disease.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

Extended boundary shift integral.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

Coronary centerline extraction based on ostium detection and model-guided directional minimal path.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

A Computer Assisted Planning System for the Placement of sEEG Electrodes in the Treatment of Epilepsy.
Proceedings of the Information Processing in Computer-Assisted Interventions, 2014

Simulated Field Maps: Toward Improved Susceptibility Artefact Correction in Interventional MRI.
Proceedings of the Information Processing in Computer-Assisted Interventions, 2014

2D-3D Pose Tracking of Rigid Instruments in Minimally Invasive Surgery.
Proceedings of the Information Processing in Computer-Assisted Interventions, 2014

Learning Imaging Biomarker Trajectories from Noisy Alzheimer's Disease Data Using a Bayesian Multilevel Model.
Proceedings of the Bayesian and grAphical Models for Biomedical Imaging, 2014

2013
Toward Detection and Localization of Instruments in Minimally Invasive Surgery.
IEEE Trans. Biomed. Engineering, 2013

MIRIAD - Public release of a multiple time point Alzheimer's MR imaging dataset.
NeuroImage, 2013

An unbiased longitudinal analysis framework for tracking white matter changes using diffusion tensor imaging with application to Alzheimer's disease.
NeuroImage, 2013

AdaPT: An adaptive preterm segmentation algorithm for neonatal brain MRI.
NeuroImage, 2013

The estimation of patient-specific cardiac diastolic functions from clinical measurements.
Medical Image Analysis, 2013

Benchmarking framework for myocardial tracking and deformation algorithms: An open access database.
Medical Image Analysis, 2013

STEPS: Similarity and Truth Estimation for Propagated Segmentations and its application to hippocampal segmentation and brain parcelation.
Medical Image Analysis, 2013

Wrapper Methods to Correct Mislabelled Training Data.
Proceedings of the International Workshop on Pattern Recognition in Neuroimaging, 2013

A registration and atlas propagation based framework for automatic whole heart segmentation of CT volumes.
Proceedings of the Medical Imaging 2013: Image Processing, 2013

Computation on shape manifold for atlas generation: application to whole heart segmentation of cardiac MRI.
Proceedings of the Medical Imaging 2013: Image Processing, 2013

Landmark detection and coupled patch registration for cardiac motion tracking.
Proceedings of the Medical Imaging 2013: Image Processing, 2013

CT colonography: inverse-consistent symmetric registration of prone and supine inner colon surfaces.
Proceedings of the Medical Imaging 2013: Image Processing, 2013

Susceptibility artefact correction by combining B0 field maps and non-rigid registration using graph cuts.
Proceedings of the Medical Imaging 2013: Image Processing, 2013

A Bayesian Approach for Spatially Adaptive Regularisation in Non-rigid Registration.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Registration of Prone and Supine CT Colonography Datasets with Differing Endoluminal Distension.
Proceedings of the Abdominal Imaging. Computation and Clinical Applications, 2013

Quantitative Airway Analysis in Longitudinal Studies Using Groupwise Registration and 4D Optimal Surfaces.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Measurement of Myelin in the Preterm Brain: Multi-compartment Diffusion Imaging and Multi-component T2 Relaxometry.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Model-Guided Directional Minimal Path for Fully Automatic Extraction of Coronary Centerlines from Cardiac CTA.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Attenuation Correction Synthesis for Hybrid PET-MR Scanners.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Biomechanically guided prone-to-supine image registration of breast MRI using an estimated reference state.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Nonrigid image registration with two-sided space-fractional partial differential equations.
Proceedings of the IEEE International Conference on Image Processing, 2013

Multi-atlas Propagation Whole Heart Segmentation from MRI and CTA Using a Local Normalised Correlation Coefficient Criterion.
Proceedings of the Functional Imaging and Modeling of the Heart, 2013

2012
Abdominal Palpation Haptic Device for Colonoscopy Simulation Using Pneumatic Control.
IEEE Trans. Haptics, 2012

A Comprehensive Cardiac Motion Estimation Framework Using Both Untagged and 3-D Tagged MR Images Based on Nonrigid Registration.
IEEE Trans. Med. Imaging, 2012

Accurate Localization of Optic Radiation During Neurosurgery in an Interventional MRI Suite.
IEEE Trans. Med. Imaging, 2012

Consistent multi-time-point brain atrophy estimation from the boundary shift integral.
NeuroImage, 2012

An event-based model for disease progression and its application in familial Alzheimer's disease and Huntington's disease.
NeuroImage, 2012

MRI to X-ray mammography registration using a volume-preserving affine transformation.
Medical Image Analysis, 2012

Re-localisation of a biopsy site in endoscopic images and characterisation of its uncertainty.
Medical Image Analysis, 2012

Inverse-Consistent Symmetric Free Form Deformation.
Proceedings of the Biomedical Image Registration - 5th International Workshop, 2012

Parametric non-rigid registration using a stationary velocity field.
Proceedings of the 2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, 2012

Motion modelling and motion compensated reconstruction of tumours in cone-beam computed tomography.
Proceedings of the 2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, 2012

Multi-STEPS: Multi-label similarity and truth estimation for propagated segmentations.
Proceedings of the 2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, 2012

Classification of Alzheimer's disease patients with hippocampal shape, wrapper based feature selection and support vector machine.
Proceedings of the Medical Imaging 2012: Image Processing, 2012

Using fractional gradient information in non-rigid image registration: application to breast MRI.
Proceedings of the Medical Imaging 2012: Image Processing, 2012

Manifold learning for atlas selection in multi atlas-based segmentation of hippocampus.
Proceedings of the Medical Imaging 2012: Image Processing, 2012

Explicit contact modeling for surgical computer guidance and simulation.
Proceedings of the Medical Imaging 2012: Image-Guided Procedures, 2012

Immediate ROI Search for 3-D Medical Images.
Proceedings of the Medical Content-Based Retrieval for Clinical Decision Support, 2012

Steady-State Model of the Radio-Pharmaceutical Uptake for MR-PET.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

Radial Structure in the Preterm Cortex; Persistence of the Preterm Phenotype at Term Equivalent Age?
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

Cortical Folding Analysis on Patients with Alzheimer's Disease and Mild Cognitive Impairment.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

Geodesic Shape-Based Averaging.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

Geodesic Information Flows.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

Classification of Alzheimer's disease patients and controls with Gaussian processes.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

2011
A Nonrigid Registration Framework Using Spatially Encoded Mutual Information and Free-Form Deformations.
IEEE Trans. Med. Imaging, 2011

A Reduced Order Explicit Dynamic Finite Element Algorithm for Surgical Simulation.
IEEE Trans. Med. Imaging, 2011

Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge.
IEEE Trans. Med. Imaging, 2011

Brain MAPS: An automated, accurate and robust brain extraction technique using a template library.
NeuroImage, 2011

Magnetic resonance virtual histology for embryos: 3D atlases for automated high-throughput phenotyping.
NeuroImage, 2011

A comparison of voxel and surface based cortical thickness estimation methods.
NeuroImage, 2011

LoAd: A locally adaptive cortical segmentation algorithm.
NeuroImage, 2011

Motion tracking of left ventricle and coronaries in 4D CTA.
Proceedings of the Medical Imaging 2011: Image Processing, 2011

Log-Euclidean free-form deformation.
Proceedings of the Medical Imaging 2011: Image Processing, 2011

Topologically correct cortical segmentation using Khalimsky's cubic complex framework.
Proceedings of the Medical Imaging 2011: Image Processing, 2011

Automatic Cardiac Motion Tracking Using Both Untagged and 3D Tagged MR Images.
Proceedings of the Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges, 2011

A Multi-image Graph Cut Approach for Cardiac Image Segmentation and Uncertainty Estimation.
Proceedings of the Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges, 2011

Probabilistic Graphical Model of SPECT/MRI.
Proceedings of the Machine Learning in Medical Imaging - Second International Workshop, 2011

4-D Generative Model for PET/MRI Reconstruction.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

Adaptive Neonate Brain Segmentation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

Longitudinal Cortical Thickness Estimation Using Khalimsky's Cubic Complex.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

Automated brain extraction using Multi-Atlas Propagation and Segmentation (MAPS).
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Edge preserving bowsher prior with nonlocal weighting for 3D spect reconstruction.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

A hybrid fem-based method for aligning prone and supine images for image guided breast surgery.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Integrating structural and diffusion MR information for optic radiation localisation in focal epilepsy patients.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Cross-sectional analysis using voxel or surface based cortical thickness methods: A comparison study.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

An Event-Based Disease Progression Model and Its Application to Familial Alzheimer's Disease.
Proceedings of the Information Processing in Medical Imaging, 2011

On the Extraction of Topologically Correct Thickness Measurements Using Khalimsky's Cubic Complex.
Proceedings of the Information Processing in Medical Imaging, 2011

Improved Neuronavigation through Integration of Intraoperative Anatomical and Diffusion Images in an Interventional MRI Suite.
Proceedings of the Information Processing in Computer-Assisted Interventions, 2011

A Framework Combining Multi-sequence MRI for Fully Automated Quantitative Analysis of Cardiac Global And Regional Functions.
Proceedings of the Functional Imaging and Modeling of the Heart, 2011

Automatic Segmentation of Different Pathologies from Cardiac Cine MRI Using Registration and Multiple Component EM Estimation.
Proceedings of the Functional Imaging and Modeling of the Heart, 2011

2010
A Registration-Based Propagation Framework for Automatic Whole Heart Segmentation of Cardiac MRI.
IEEE Trans. Med. Imaging, 2010

Automatic Segmentation and Quantitative Analysis of the Articular Cartilages From Magnetic Resonance Images of the Knee.
IEEE Trans. Med. Imaging, 2010

Distinct profiles of brain atrophy in frontotemporal lobar degeneration caused by progranulin and tau mutations.
NeuroImage, 2010

Progressive logopenic/phonological aphasia: Erosion of the language network.
NeuroImage, 2010

Robust atrophy rate measurement in Alzheimer's disease using multi-site serial MRI: Tissue-specific intensity normalization and parameter selection.
NeuroImage, 2010

Automated cross-sectional and longitudinal hippocampal volume measurement in mild cognitive impairment and Alzheimer's disease.
NeuroImage, 2010

Atrophy patterns in Alzheimer's disease and semantic dementia: A comparison of FreeSurfer and manual volumetric measurements.
NeuroImage, 2010

Head size, age and gender adjustment in MRI studies: a necessary nuisance?
NeuroImage, 2010

Developing a Next Generation Colonoscopy Simulator.
Int. J. Image Graphics, 2010

Fast free-form deformation using graphics processing units.
Computer Methods and Programs in Biomedicine, 2010

Spatial Information Encoded Mutual Information for Nonrigid Registration.
Proceedings of the Biomedical Image Registration, 4th International Workshop, 2010

Nonlinear Elastic Spline Registration: Evaluation with Longitudinal Huntington's Disease Data.
Proceedings of the Biomedical Image Registration, 4th International Workshop, 2010

Diffeomorphic demons using normalized mutual information, evaluation on multimodal brain MR images.
Proceedings of the Medical Imaging 2010: Image Processing, 2010

Whole Heart Segmentation of Cardiac MRI Using Multiple Path Propagation Strategy.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

Real-Time Surgical Simulation Using Reduced Order Finite Element Analysis.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

Establishing Spatial Correspondence between the Inner Colon Surfaces from Prone and Supine CT Colonography.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

Automatic MRI Atlas-Based External Beam Radiation Therapy Treatment Planning for Prostate Cancer.
Proceedings of the Prostate Cancer Imaging. Computer-Aided Diagnosis, 2010

A Framework for Using Diffusion Weighted Imaging to Improve Cortical Parcellation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

A System for Biopsy Site Re-targeting with Uncertainty in Gastroenterology and Oropharyngeal Examinations.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

Combined Reconstruction and Registration of Digital Breast Tomosynthesis.
Proceedings of the Digital Mammography, 2010

X-ray Mammography - MRI Registration Using a Volume-Preserving Affine Transformation and an EM-MRF for Breast Tissue Classification.
Proceedings of the Digital Mammography, 2010

Fast Deformation Simulation of Breasts Using GPU-Based Dynamic Explicit Finite Element Method.
Proceedings of the Digital Mammography, 2010

Registration-based propagation for whole heart segmentation from compounded 3D echocardiography.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

Nonrigid registration with differential bias correction using normalised mutual information.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

Locally weighted Markov random fields for cortical segmentation.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

2009
Issues with threshold masking in voxel-based morphometry of atrophied brains.
NeuroImage, 2009

Comparison of phantom and registration scaling corrections using the ADNI cohort.
NeuroImage, 2009

On modelling of anisotropic viscoelasticity for soft tissue simulation: Numerical solution and GPU execution.
Medical Image Analysis, 2009

Automated voxel-based 3D cortical thickness measurement in a combined Lagrangian-Eulerian PDE approach using partial volume maps.
Medical Image Analysis, 2009

A parallel-friendly normalized mutual information gradient for free-form registration.
Proceedings of the Medical Imaging 2009: Image Processing, 2009

Nonrigid correction of interleaving artefacts in pelvic MRI.
Proceedings of the Medical Imaging 2009: Image Processing, 2009

Improved Maximum a Posteriori Cortical Segmentation by Iterative Relaxation of Priors.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

Biopsy Site Re-localisation Based on the Computation of Epipolar Lines from Two Previous Endoscopic Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

Automated Segmentation of the Menisci from MR Images.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

Unifying Encoding of Spatial Information in Mutual Information for Nonrigid Registration.
Proceedings of the Information Processing in Medical Imaging, 2009

Pneumatic haptic interface fuzzy controller for simulation of abdominal palpations during colonoscopy.
Proceedings of the World Haptics 2009, 2009

Free-Form Deformations Using Adaptive Control Point Status for Whole Heart MR Segmentation.
Proceedings of the Functional Imaging and Modeling of the Heart, 2009

2008
High-Speed Nonlinear Finite Element Analysis for Surgical Simulation Using Graphics Processing Units.
IEEE Trans. Med. Imaging, 2008

Appearance modeling of 11C PiB PET images: Characterizing amyloid deposition in Alzheimer's disease, mild cognitive impairment and healthy aging.
NeuroImage, 2008

Editorial.
Medical Image Analysis, 2008

A quantitative assessment of approaches to mesh generation for surgical simulation.
Eng. Comput. (Lond.), 2008

Consistency of parametric registration in serial MRI studies of brain tumor progression.
Int. J. Comput. Assist. Radiol. Surg., 2008

A Modular Simulation Framework for Colonoscopy using a New Haptic Device.
Proceedings of the Medicine Meets Virtual Reality 16, 2008

Towards anatomical modelling of multiple organs interaction using real time GPU based non-linear elasticity.
Proceedings of the Medicine Meets Virtual Reality 16, 2008

Cortical thickness measurement from magnetic resonance images using partial volume estimation.
Proceedings of the Medical Imaging 2008: Image Processing, 2008

Pyramidal flux in an anisotropic diffusion scheme for enhancing structures in 3D images.
Proceedings of the Medical Imaging 2008: Image Processing, 2008

An Atlas-Based Segmentation Propagation Framework Using Locally Affine Registration - Application to Automatic Whole Heart Segmentation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

Modelling Anisotropic Viscoelasticity for Real-Time Soft Tissue Simulation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

MR-Less High Dimensional Spatial Normalization of 11C PiB PET Images on a Population of Elderly, Mild Cognitive Impaired and Alzheimer Disease Patients.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

Automatic Delineation of Sulci and Improved Partial Volume Classification for Accurate 3D Voxel-Based Cortical Thickness Estimation from MR.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

Deforming a High-Resolution Mesh in Real-Time by Mapping onto a Low-Resolution Physical Model.
Proceedings of the Biomedical Simulation, 4th International Symposium, 2008

Efficient Nonlinear FEM for Soft Tissue Modelling and Its GPU Implementation within the Open Source Framework SOFA.
Proceedings of the Biomedical Simulation, 4th International Symposium, 2008

Texture coordinate generation of colonic surface meshes for surgical simulation.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

Atlas based automated segmentation of the quadratus lumborum muscle using non-rigid registration on magnetic resonance images of the thoracolumbar region.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

Generative atlases and atlas selection for C11-PIB PET-PET registration of elderly, mild cognitive impaired and Alzheimer disease patients.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

Estimation of shape model parameters for 3D surfaces.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

Improved cortical thickness measurement from MR images using partial volume estimation.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

A Haptic Interface with Motor/Brake System for Colonoscopy Simulation.
Proceedings of the 2008 Symposium on Haptic Interfaces for Virtual Environment and Teleoperator Systems, 2008

2007
A three-dimensional, histological and deformable atlas of the human basal ganglia. I. Atlas construction based on immunohistochemical and MRI data.
NeuroImage, 2007

MR image segmentation of the knee bone using phase information.
Medical Image Analysis, 2007

Progressive Update Approach to Real-time Cutting of Finite Element Models in Surgical Simulation.
Proceedings of the Medicine Meets Virtual Reality 15, 2007

Expectation maximization classification and Laplacian based thickness measurement for cerebral cortex thickness estimation.
Proceedings of the Medical Imaging 2007: Image Processing, 2007

Shape based segmentation of MRIs of the bones in the knee using phase and intensity information.
Proceedings of the Medical Imaging 2007: Image Processing, 2007

Real-Time Nonlinear Finite Element Analysis for Surgical Simulation Using Graphics Processing Units.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29, 2007

Spline Based Inhomogeneity Correction for 11C-PIB PET Segmentation Using Expectation Maximization.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29, 2007

Automatic Segmentation of Articular Cartilage in Magnetic Resonance Images of the Knee.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29, 2007

Pib-Pet Segmentation for Automatic Suvr Normalisation without Mr Information.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Application-Driven Quantitative Assessment of Approaches to Mesh Generation.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Automatic Segmentation of the Bones from Mr Images of The Knee.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Efficient Use of Cerebral Cortical Thickness to Correct Brain Mr Segmentation.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Filtering and Restoration of Structures in 3d Ultrasound Images.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

A Visual Dataflow Language for Image Segmentation and Registration.
Proceedings of the Software and Data Technologies - Second International Conference, 2007

Itkboard: A Visual Dataflow Language for Biomedical Image Processing.
Proceedings of the ICSOFT 2007, 2007

Fuzzy classificationof brain MRI using a priori knowledge: weighted fuzzy C-means.
Proceedings of the IEEE 11th International Conference on Computer Vision, 2007

2006
A subdivision-based parametric deformable model for surface extraction and statistical shape modeling of the knee cartilages.
Proceedings of the Medical Imaging 2006: Visualization, 2006

Generation of Curved Planar Reformations from Magnetic Resonance Images of the Spine.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006

MR Image Segmentation Using Phase Information and a Novel Multiscale Scheme.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006

Using marker-based deformable models for deriving anatomical models from medical image databases.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

Texture-based segmentation of the knee bones in MRI using phase information.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

Automatic Segmentation of the Knee Bones using 3D Active Shape Models.
Proceedings of the 18th International Conference on Pattern Recognition (ICPR 2006), 2006

2005
A marker-induced vector field for reduced sensitivity to initialization for parametric and geometric deformable models.
Proceedings of the Medical Imaging 2005: Image Processing, 2005

The Use of Unwrapped Phase in MR Image Segmentation: A Preliminary Study.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005

In Use Parameter Estimation of Inertial Sensors by Detecting Multilevel Quasi-static States.
Proceedings of the Knowledge-Based Intelligent Information and Engineering Systems, 2005

Towards a Visual Programming Environment Based on ITK for Medical Image Analysis.
Proceedings of the International Conference on Digital Image Computing: Techniques and Applications, 2005

Automatic Initialization of 3D Deformable Models for Cartilage Segmentation.
Proceedings of the International Conference on Digital Image Computing: Techniques and Applications, 2005

3D Statistical Shape Models to Embed Spatial Relationship Information.
Proceedings of the Computer Vision for Biomedical Image Applications, 2005

Real-Time Topology Modification for Finite Element Models with Haptic Feedback.
Proceedings of the Computer Analysis of Images and Patterns, 11th International Conference, 2005

2004
Contact Modelling Based on Displacement Field Redistribution for Surgical Simulation.
Proceedings of the Medical Imaging and Augmented Reality: Second International Workshop, 2004

2003
Combining Front Propagation with Shape Knowledge for Accurate Curvilinear Modelling.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003

BSP-Assisted Constrained Tetrahedralization.
Proceedings of the 12th International Meshing Roundtable, 2003

Accurate Curvilinear Modeling for Precise Measurements of Tubular Structures.
Proceedings of the Seventh International Conference on Digital Image Computing: Techniques and Applications, 2003

2002
Computation of the Mid-Sagittal Plane in 3D Brain Images.
IEEE Trans. Med. Imaging, 2002

Robust Registration of Multi-modal Images: Towards Real-Time Clinical Applications.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2002

Co-registration of Histological, Optical and MR Data of the Human Brain.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2002

Three dimensional functional cartography of the human basal ganglia by registration of optical and histological serial sections.
Proceedings of the 2002 IEEE International Symposium on Biomedical Imaging, 2002

2001
Reconstructing a 3D structure from serial histological sections.
Image Vision Comput., 2001

Fusion of Histological Sections and MR Images: Towards the Construction of an Atlas of the Human Basal Ganglia.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2001

Registration of Reconstructed Post Mortem Optical Data with MR Scans of the Same Patient.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2001

2000
Generalized Correlation Ratio for Rigid Registration of 3D Ultrasound with MR Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2000

Block Matching: A General Framework to Improve Robustness of Rigid Registration of Medical Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2000

3-D Reconstruction of Macroscopic Optical Brain Slice Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2000

Computation of the Mid-Sagittal Plane in 3D Medical Images of the Brain.
Proceedings of the Computer Vision - ECCV 2000, 6th European Conference on Computer Vision, Dublin, Ireland, June 26, 2000


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