Osamu Maruyama

According to our database, Osamu Maruyama authored at least 50 papers between 1995 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

CBOEP: Generating negative enhancer-promoter interactions to train classifiers.

Tsukasa Koga, Osamu Maruyama

Proceedings of the 14th ACM International Conference on Bioinformatics, 2023

2022

CMIC: predicting DNA methylation inheritance of CpG islands with embedding vectors of variable-length k-mers.

Osamu Maruyama, Yinuo Li, Hiroki Narita, Hidehiro Toh, Wan Kin Au Yeung, Hiroyuki Sasaki

BMC Bioinform., 2022

2021

A convolutional neural network-based regression model to infer the epigenetic crosstalk responsible for CG methylation patterns.

Wan Kin Au Yeung, Osamu Maruyama, Hiroyuki Sasaki

BMC Bioinform., 2021

2019

DegSampler3: Pairwise Dependency Model in Degradation Motif Site Prediction of Substrate Protein Sequences.

Osamu Maruyama, Fumiko Matsuzaki

Proceedings of the 19th IEEE International Conference on Bioinformatics and Bioengineering, 2019

2018

Development of an Intelligent Ventricular Assist Device with a Function of Sensorless Thrombus Detection.

Takuro Maruyama, Tomotaka Murashige, Daisuke Sakota, Osamu Maruyama, Wataru Hijikata

Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2018

DegSampler: Collapsed Gibbs Sampler for Detecting E3 Binding Sites.

Osamu Maruyama, Fumiko Matsuzaki

Proceedings of the 18th IEEE International Conference on Bioinformatics and Bioengineering, 2018

2017

RocSampler: regularizing overlapping protein complexes in protein-protein interaction networks.

Osamu Maruyama, Yuki Kuwahara

BMC Bioinform., 2017

2016

Reaction mechanism of blood coagulation factors in shear flow field.

Koki Kawakami, Daisuke Sakota, Ryo Kosaka, Masahiro Nishida, Yasuo Kawaguchi, Osamu Maruyama

Proceedings of the 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2016

2015

Hyperspectral imaging of vascular anastomosis associated with blood flow and hemoglobin concentration.

Daisuke Sakota, Eiki Nagaoka, Osamu Maruyama

Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2015

Development of a photon-cell interactive monte carlo simulation for non-invasive measurement of blood glucose level by Raman spectroscopy.

Daisuke Sakota, Ryo Kosaka, Masahiro Nishida, Osamu Maruyama

Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2015

Evaluation of erythrocyte flow at a bearing gap in a hydrodynamically levitated centrifugal blood pump.

Tomotaka Murashige, Ryo Kosaka, Daisuke Sakota, Masahiro Nishida, Yasuo Kawaguchi, Takashi Yamane, Osamu Maruyama

Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2015

Bearing gap adjustment for improvement of levitation performance in a hydrodynamically levitated centrifugal blood pump.

Ryo Kosaka, Fumihiko Yoshida, Masahiro Nishida, Osamu Maruyama, Yasuo Kawaguchi, Takashi Yamane

Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2015

Regularizing predicted complexes by mutually exclusive protein-protein interactions.

Osamu Maruyama, Limsoon Wong

Proceedings of the 2015 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining, 2015

2014

ReSAPP: Predicting overlapping protein complexes by merging multiple-sampled partitions of proteins.

So Kobiki, Osamu Maruyama

J. Bioinform. Comput. Biol., 2014

Discovery of small protein complexes from PPI networks with size-specific supervised weighting.

Chern Han Yong, Osamu Maruyama, Limsoon Wong

BMC Syst. Biol., 2014

Prediction of heterotrimeric protein complexes by two-phase learning using neighboring kernels.

Peiying Ruan, Morihiro Hayashida, Osamu Maruyama, Tatsuya Akutsu

BMC Bioinform., 2014

A scale-free structure prior for Bayesian inference of Gaussian graphical models.

Osamu Maruyama, Shota Shikita

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013

The Purity Measure for genomic Regions leads to Horizontally Transferred genes.

Yuta Taniguchi, Yasuhiro Yamada, Osamu Maruyama, Satoru Kuhara, Daisuke Ikeda

J. Bioinform. Comput. Biol., 2013

PPSampler2: Predicting protein complexes more accurately and efficiently by sampling.

Chasanah Kusumastuti Widita, Osamu Maruyama

BMC Syst. Biol., 2013

Heterodimeric protein complex identification by naïve Bayes classifiers.

Osamu Maruyama

BMC Bioinform., 2013

Risk analysis and detection of thrombosis by measurement of electrical resistivity of blood.

Achyut Sapkota, Yuta Asakura, Osamu Maruyama, Ryo Kosaka, Takashi Yamane, Masahiro Takei

Proceedings of the 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2013

Simultaneous determination of hemolysis and hematocrit in extracorporeal circulation by plasma surface reflectance spectroscopy.

Daisuke Sakota, Yuki Kani, Ryo Kosaka, Masahiro Nishida, Osamu Maruyama

Proceedings of the 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2013

Effect of impeller flow path on pump performance and impeller stability of the monopivot circulatory pump.

Masahiro Nishida, Kento Nakayama, Ryo Kosaka, Osamu Maruyama, Yasuo Kawaguchi, Katsuyuki Kuwana, Takashi Yamane

Proceedings of the 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2013

Fluid dynamic design for low hemolysis in a hydrodynamically levitated centrifugal blood pump.

Tomotaka Murashige, Ryo Kosaka, Masahiro Nishida, Osamu Maruyama, Takashi Yamane, Katsuyuki Kuwana, Yasuo Kawaguchi

Proceedings of the 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2013

Noninvasive blood-flow meter using a curved cannula with zero compensation for an axial flow blood pump.

Ryo Kosaka, Kyohei Fukuda, Masahiro Nishida, Osamu Maruyama, Takashi Yamane

Proceedings of the 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2013

Infrequent, Unexpected, and Contrast Pattern Discovery from Bacterial Genomes by Genome-wide Comparative Analysis.

Daisuke Ikeda, Osamu Maruyama, Satoru Kuhara

Proceedings of the BIOINFORMATICS 2013 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Barcelona, Spain, 11, 2013

2011

Improvement of hemocompatibility for hydrodynamic levitation centrifugal pump by optimizing step bearings.

Ryo Kosaka, Toru Yada, Masahiro Nishida, Osamu Maruyama, Takashi Yamane

Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

Noninvasive miniaturized mass-flow meter using a curved cannula for implantable axial flow blood pump.

Ryo Kosaka, Masahiro Nishida, Osamu Maruyama, Takashi Yamane

Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

Heterodimeric protein complex identification.

Osamu Maruyama

Proceedings of the ACM International Conference on Bioinformatics, 2011

2010

NWE: Node-weighted expansion for protein complex prediction using random walk distances.

Osamu Maruyama, Ayaka Chihara

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

2008

Evaluating Protein Sequence Signatures Inferred from Protein-Protein Interaction Data by Gene Ontology Annotations.

Osamu Maruyama, Hideki Hirakawa, Takao Iwayanagi, Yoshiko Ishida, Shizu Takeda, Jun Otomo, Satoru Kuhara

Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

2005

Reconstructing phylogenetic trees of prokaryote genomes by randomly sampling oligopeptides.

Osamu Maruyama, Akiko Matsuda, Satoru Kuhara

Int. J. Bioinform. Res. Appl., 2005

2004

Searching for Regulatory Elements of Alternative Splicing Events Using Phylogenetic Footprinting.

Daichi Shigemizu, Osamu Maruyama

Proceedings of the Algorithms in Bioinformatics, 4th International Workshop, 2004

Extensive Search for Discriminative Features of Alternative Splicing.

Hiroki Sakai, Osamu Maruyama

Proceedings of the Biocomputing 2004, 2004

2003

Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model.

Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano

Theor. Comput. Sci., 2003

Finding optimal degenerate patterns in DNA sequences.

Daisuke Shinozaki, Tatsuya Akutsu, Osamu Maruyama

Proceedings of the European Conference on Computational Biology (ECCB 2003), 2003

2002

Fast algorithm for extracting multiple unordered short motifs using bit operations.

Osamu Maruyama, Hideo Bannai, Yoshinori Tamada, Satoru Kuhara, Satoru Miyano

Inf. Sci., 2002

Extensive feature detection of N-terminal protein sorting signals.

Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Kenta Nakai, Satoru Miyano

Bioinform., 2002

Foundations of Designing Computational Knowledge Discovery Processes.

Yoshinori Tamada, Hideo Bannai, Osamu Maruyama, Satoru Miyano

Proceedings of the Progress in Discovery Science, 2002

Toward Drawing an Atlas of Hypothesis Classes: Approximating a Hypothesis via Another Hypothesis Model.

Osamu Maruyama, Takayoshi Shoudai, Satoru Miyano

Proceedings of the Discovery Science, 5th International Conference, 2002

2001

HypothesisCreator: Concepts for Accelerating the Computational Knowledge Discovery Process.

Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Satoru Miyano

Electron. Trans. Artif. Intell., 2001

Views: Fundamental Building Blocks in the Process of Knowledge Discovery.

Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Kenta Nakai, Satoru Miyano

Proceedings of the Fourteenth International Florida Artificial Intelligence Research Society Conference, 2001

Learning Conformation Rules.

Osamu Maruyama, Takayoshi Shoudai, Emiko Furuichi, Satoru Kuhara, Satoru Miyano

Proceedings of the Discovery Science, 4th International Conference, DS 2001, Washington, 2001

VML: A View Modeling Language for Computational Knowledge Discovery.

Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Satoru Miyano

Proceedings of the Discovery Science, 4th International Conference, DS 2001, Washington, 2001

1999

Designing Views in HypothesisCreator: System for Assisting in Discovery.

Osamu Maruyama, Tomoyuki Uchida, Kim Lan Sim, Satoru Miyano

Proceedings of the Discovery Science, 1999

1998

Identification of Gene Regulatory Networks by Strategic Gene Disruptions and Gene Overexpressions.

Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano

Proceedings of the Ninth Annual ACM-SIAM Symposium on Discrete Algorithms, 1998

Toward Genomic Hypothesis Creator: View Designer for Discovery.

Osamu Maruyama, Tomoyuki Uchida, Takayoshi Shoudai, Satoru Miyano

Proceedings of the Discovery Science, 1998

1996

Inferring a Tree from Walks.

Osamu Maruyama, Satoru Miyano

Theor. Comput. Sci., 1996

Extracting Best Consensus Motifs from Positive and Negative Examples.

Erika Tateishi, Osamu Maruyama, Satoru Miyano

Proceedings of the STACS 96, 1996

1995

Graph Inference from a Walk for TRees of Bounded Degree 3 is NP-Complete.

Osamu Maruyama, Satoru Miyano

Proceedings of the Mathematical Foundations of Computer Science 1995, 1995