Morihiro Hayashida

According to our database1, Morihiro Hayashida authored at least 41 papers between 2003 and 2018.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.



In proceedings 
PhD thesis 




ncRNA-disease association prediction based on sequence information and tripartite network.
BMC Systems Biology, 2018

Improving prediction of heterodimeric protein complexes using combination with pairwise kernel.
BMC Bioinformatics, 2018

Bastion6: a bioinformatics approach for accurate prediction of type VI secreted effectors.
Bioinformatics, 2018

Grammar-based Compression for Directed and Undirected Generalized Series-parallel Graphs using Integer Linear Programming.
Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2018), 2018

Enumeration Method for Structural Isomers Containing User-Defined Structures Based on Breadth-First Search Approach.
Journal of Computational Biology, 2016

Enumeration method for tree-like chemical compounds with benzene rings and naphthalene rings by breadth-first search order.
BMC Bioinformatics, 2016

LBSizeCleav: improved support vector machine (SVM)-based prediction of Dicer cleavage sites using loop/bulge length.
BMC Bioinformatics, 2016

Critical evaluation of in silico methods for prediction of coiled-coil domains in proteins.
Briefings in Bioinformatics, 2016

Integer Linear Programming Approach to Median and Center Strings for a Probability Distribution on a Set of Strings.
Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2016), 2016

Host-Pathogen Protein Interaction Prediction Based on Local Topology Structures of a Protein Interaction Network.
Proceedings of the 16th IEEE International Conference on Bioinformatics and Bioengineering, 2016

Grammar-based compression approach to extraction of common rules among multiple trees of glycans and RNAs.
BMC Bioinformatics, 2015

Domain-Based Approaches to Prediction and Analysis of Protein-Protein Interactions.
IJKDB, 2014

Prediction of heterotrimeric protein complexes by two-phase learning using neighboring kernels.
BMC Bioinformatics, 2014

Breadth-First Search Approach to Enumeration of Tree-like Chemical Compounds.
J. Bioinformatics and Computational Biology, 2013

Prediction of protein-RNA residue-base contacts using two-dimensional conditional random field with the lasso.
BMC Systems Biology, 2013

Protein complex prediction via improved verification methods using constrained domain-domain matching.
IJBRA, 2012

Integer Programming-Based Approach to Attractor Detection and Control of Boolean Networks.
IEICE Transactions, 2012

A quadsection algorithm for grammar-based image compression.
Integrated Computer-Aided Engineering, 2012

Finding Conserved Regions in Protein Structures Using Support Vector Machines and Structure Alignment.
Proceedings of the Pattern Recognition in Bioinformatics, 2012

Predicting protein-RNA residue-base contacts using two-dimensional conditional random field.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012

Measuring the Similarity of Protein Structures Using Image Compression Algorithms.
IEICE Transactions, 2011

Conditional random field approach to prediction of protein-protein interactions using domain information.
BMC Systems Biology, 2011

Comparing biological networks via graph compression.
BMC Systems Biology, 2010

Integer programming-based method for grammar-based tree compression and its application to pattern extraction of glycan tree structures.
BMC Bioinformatics, 2010

The role of internal duplication in the evolution of multi-domain proteins.
Biosystems, 2010

A Quadsection Algorithm for Grammar-Based Image Compression.
Proceedings of the Future Generation Information Technology, 2010

Emergence of scale-free distribution in protein-protein interaction networks based on random selection of interacting domain pairs.
Biosystems, 2009

A Bipartite Graph Based Model of Protein Domain Networks.
Proceedings of the Complex Sciences, 2009

Integer programming-based methods for attractor detection and control of boolean networks.
Proceedings of the 48th IEEE Conference on Decision and Control, 2009

Integer programming-based approach to allocation of reporter genes for cell array analysis.
IJBRA, 2008

Algorithms and Complexity Analyses for Control of Singleton Attractors in Boolean Networks.
EURASIP J. Bioinformatics and Systems Biology, 2008

Image Compression-based Approach to Measuring the Similarity of Protein Structures.
Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 2008

Algorithms for Inference, Analysis and Control of Boolean Networks.
Proceedings of the Algebraic Biology, Third International Conference, 2008

Topological aspects of protein networks.
Proceedings of the Emergent Intelligence of Networked Agents, 2007

Algorithms for Finding Small Attractors in Boolean Networks.
EURASIP J. Bioinformatics and Systems Biology, 2007

A Novel Clustering Method for Analysis of Biological Networks using Maximal Components of Graphs.
Proceedings of 5th Asia-Pacific Bioinformatics Conference, 2007

Dynamic Programming and Clique Based Approaches for Protein Threading with Profiles and Constraints.
IEICE Transactions, 2006

On the Complexity of Finding Control Strategies for Boolean Networks.
Proceedings of 4th Asia-Pacific Bioinformatics Conference. 13-16 February 2006, 2006

Fast image synthesis of virtual objects in a real scene with natural shadings.
Systems and Computers in Japan, 2005

Protein Threading with Profiles and Constraints.
Proceedings of the 4th IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2004), 2004

Inferring strengths of protein-protein interactions from experimental data using linear programming.
Proceedings of the European Conference on Computational Biology (ECCB 2003), 2003