Ozgur E. Akman

According to our database, Ozgur E. Akman authored at least 23 papers between 2006 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Global nonlinear approach for mapping parameters of neural mass models.

Dominic M. Dunstan, Mark P. Richardson, Eugenio Abela, Ozgur E. Akman, Marc Goodfellow

PLoS Comput. Biol., March, 2023

BDEtools: A MATLAB Package for Boolean Delay Equation Modeling.

Ozgur E. Akman, Kevin Doherty, Benjamin J. Wareham

J. Comput. Biol., 2023

2021

Reduced Models of Gene Regulatory Networks: Visualising Multi-modal Landscapes.

Khulood AlYahya, Kevin A. J. Doherty, Ozgur E. Akman, Jonathan E. Fieldsend

Proceedings of the Metaheuristics for Finding Multiple Solutions, 2021

Towards population-based fitness landscape analysis using local optima networks.

Melike D. Karatas, Ozgur E. Akman, Jonathan E. Fieldsend

Proceedings of the GECCO '21: Genetic and Evolutionary Computation Conference, 2021

2020

SODECL: An Open-Source Library for Calculating Multiple Orbits of a System of Stochastic Differential Equations in Parallel.

Eleftherios Avramidis, Marta Lalik, Ozgur E. Akman

ACM Trans. Math. Softw., 2020

A simplified modelling framework facilitates more complex representations of plant circadian clocks.

Mathias Foo, Declan G. Bates, Ozgur E. Akman

PLoS Comput. Biol., 2020

Slow-fast control of eye movements: an instance of Zeeman's model for an action.

Richard A. Clement, Ozgur E. Akman

Biol. Cybern., 2020

2019

Landscape analysis under measurement error.

Khulood AlYahya, Ozgur E. Akman, Jonathan E. Fieldsend

Proceedings of the Genetic and Evolutionary Computation Conference Companion, 2019

2018

Voronoi-based archive sampling for robust optimisation.

Kevin Anthony James Doherty, Khulood AlYahya, Jonathan E. Fieldsend, Ozgur E. Akman

Proceedings of the Genetic and Evolutionary Computation Conference Companion, 2018

Robust multi-modal optimisation.

Khulood AlYahya, Kevin Anthony James Doherty, Ozgur E. Akman, Jonathan E. Fieldsend

Proceedings of the Genetic and Evolutionary Computation Conference Companion, 2018

2017

Optimisation of an exemplar oculomotor model using multi-objective genetic algorithms executed on a GPU-CPU combination.

Eleftherios Avramidis, Ozgur E. Akman

BMC Syst. Biol., 2017

Optimisation and landscape analysis of computational biology models: a case study.

Kevin Anthony James Doherty, Khulood AlYahya, Ozgur E. Akman, Jonathan E. Fieldsend

Proceedings of the Genetic and Evolutionary Computation Conference, 2017

On the exploitation of search history and accumulative sampling in robust optimisation.

Khulood AlYahya, Kevin Anthony James Doherty, Jonathan E. Fieldsend, Ozgur E. Akman

Proceedings of the Genetic and Evolutionary Computation Conference, 2017

2015

Dizzy-Beats: a Bayesian evidence analysis tool for systems biology.

Stuart Aitken, Alastair M. Kilpatrick, Ozgur E. Akman

Bioinform., 2015

2014

A consensus approach to predict regulatory interactions.

Suhaib Mohammed, Ozgur E. Akman, Zheng Rong Yang

Proceedings of the 7th International Conference on Biomedical Engineering and Informatics, 2014

2013

Nested sampling for parameter inference in systems biology: application to an exemplar circadian model.

Stuart Aitken, Ozgur E. Akman

BMC Syst. Biol., 2013

SBSI: an extensible distributed software infrastructure for parameter estimation in systems biology.

Richard R. Adams, Allan Clark, Azusa Yamaguchi, Neil Hanlon, Nikos Tsorman, Shakir Ali, Galina Lebedeva, Alexey N. Goltsov, Anatoly A. Sorokin, Ozgur E. Akman, Carl Troein, Andrew J. Millar, Igor Goryanin, Stephen Gilmore

Bioinform., 2013

2012

On the role of ultrasensitivity in biomolecular control systems.

Francesco Montefusco, Arno Steinacher, Ozgur E. Akman, Declan G. Bates, Orkun S. Soyer

Proceedings of the 51th IEEE Conference on Decision and Control, 2012

2010

Complementary approaches to understanding the plant circadian clock

Ozgur E. Akman, Maria Luisa Guerriero, Laurence Loewe, Carl Troein

Proceedings of the Proceedings Third Workshop From Biology To Concurrency and back, 2010

Robustness from flexibility in the fungal circadian clock.

Ozgur E. Akman, David A. Rand, Paul E. Brown, Andrew J. Millar

BMC Syst. Biol., 2010

2009

Modelling Biological Clocks with Bio-PEPA: Stochasticity and Robustness for the <i>Neurospora crassa</i> Circadian Network.

Ozgur E. Akman, Federica Ciocchetta, Andrea Degasperi, Maria Luisa Guerriero

Proceedings of the Computational Methods in Systems Biology, 7th International Conference, 2009

2006

Nonlinear time series analysis of jerk congenital nystagmus.

Ozgur E. Akman, David S. Broomhead, Richard A. Clement, Richard V. Abadi

J. Comput. Neurosci., 2006

Stability of the saccadic oculomotor system.

Dmitry Laptev, Ozgur E. Akman, Richard A. Clement

Biol. Cybern., 2006