Paul Stapor

According to our database, Paul Stapor authored at least 7 papers between 2018 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

pyPESTO: a modular and scalable tool for parameter estimation for dynamic models.

Yannik Schälte, Fabian Fröhlich, Paul J. Jost, Jakob Vanhoefer, Dilan Pathirana, Paul Stapor, Polina A. Lakrisenko, Dantong Wang, Elba Raimúndez-Álvarez, Simon Merkt, Leonard Schmiester, Philipp Städter, Stephan Grein, Erika Dudkin, Domagoj Doresic, Daniel Weindl, Jan Hasenauer

Bioinform., November, 2023

Efficient computation of adjoint sensitivities at steady-state in ODE models of biochemical reaction networks.

Polina A. Lakrisenko, Paul Stapor, Stephan Grein, Lukasz Paszkowski, Dilan Pathirana, Fabian Fröhlich, Glenn Terje Lines, Daniel Weindl, Jan Hasenauer

PLoS Comput. Biol., January, 2023

A More Expressive Spline Representation for SBML Models Improves Code Generation Performance in AMICI.

Lorenzo Contento, Paul Stapor, Daniel Weindl, Jan Hasenauer

Proceedings of the Computational Methods in Systems Biology, 2023

2021

PEtab - Interoperable specification of parameter estimation problems in systems biology.

Leonard Schmiester, Yannik Schälte, Frank T. Bergmann, Tacio Camba, Erika Dudkin, Janine Egert, Fabian Fröhlich, Lara Fuhrmann, Adrian L. Hauber, Svenja Kemmer, Polina A. Lakrisenko, Carolin Loos, Simon Merkt, Wolfgang Müller, Dilan Pathirana, Elba Raimúndez-Álvarez, Lukas Refisch, Marcus Rosenblatt, Paul Stapor, Philipp Städter, Dantong Wang, Franz-Georg Wieland, Julio R. Banga, Jens Timmer, Alejandro F. Villaverde, Sven Sahle, Clemens Kreutz, Jan Hasenauer, Daniel Weindl

PLoS Comput. Biol., 2021

AMICI: high-performance sensitivity analysis for large ordinary differential equation models.

Fabian Fröhlich, Daniel Weindl, Yannik Schälte, Dilan Pathirana, Lukasz Paszkowski, Glenn Terje Lines, Paul Stapor, Jan Hasenauer

Bioinform., 2021

2018

PESTO: Parameter EStimation TOolbox.

Paul Stapor, Daniel Weindl, Benjamin Ballnus, Sabine Hug, Carolin Loos, Anna Fiedler, Sabrina Krause, Sabrina Hross, Fabian Fröhlich, Jan Hasenauer

Bioinform., 2018

Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis.

Paul Stapor, Fabian Fröhlich, Jan Hasenauer

Bioinform., 2018