Fabian Fröhlich

According to our database, Fabian Fröhlich authored at least 22 papers between 2014 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Beyond Slideshows - Investigating the Impact of Immersive Virtual Reality on Science Learning.

Fabian Fröhlich, Chris Hovey, Sameen Reza, Jan L. Plass

Proceedings of the IEEE Conference Virtual Reality and 3D User Interfaces, 2024

2023

pyPESTO: a modular and scalable tool for parameter estimation for dynamic models.

Yannik Schälte, Fabian Fröhlich, Paul J. Jost, Jakob Vanhoefer, Dilan Pathirana, Paul Stapor, Polina A. Lakrisenko, Dantong Wang, Elba Raimúndez-Álvarez, Simon Merkt, Leonard Schmiester, Philipp Städter, Stephan Grein, Erika Dudkin, Domagoj Doresic, Daniel Weindl, Jan Hasenauer

Bioinform., November, 2023

Efficient computation of adjoint sensitivities at steady-state in ODE models of biochemical reaction networks.

Polina A. Lakrisenko, Paul Stapor, Stephan Grein, Lukasz Paszkowski, Dilan Pathirana, Fabian Fröhlich, Glenn Terje Lines, Daniel Weindl, Jan Hasenauer

PLoS Comput. Biol., January, 2023

Does Digital Game Play Affect Social/Emotional Child Wellbeing?

Jan L. Plass, Bruce D. Homer, Meagan Bromley, Fabian Fröhlich, Yuli Shao, Jessica Young

Proceedings of the Serious Games - 9th Joint International Conference, 2023

2022

Fides: Reliable trust-region optimization for parameter estimation of ordinary differential equation models.

Fabian Fröhlich, Peter K. Sorger

PLoS Comput. Biol., 2022

BioSimulators: a central registry of simulation engines and services for recommending specific tools.

Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary B. Haiman, Jan Hasenauer, Joseph L. Hellerstein, Henning Hermjakob, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Rahuman S. Malik-Sheriff, Synchon Mandal, Robert A. McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali S. Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David D. van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, James C. Schaff, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr

Nucleic Acids Res., 2022

BioSimulators: a central registry of simulation engines and services for recommending specific tools.

Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary B. Haiman, Joseph L. Hellerstein, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Synchon Mandal, Robert A. McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali S. Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David D. van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr

CoRR, 2022

A protocol for dynamic model calibration.

Alejandro F. Villaverde, Dilan Pathirana, Fabian Fröhlich, Jan Hasenauer, Julio R. Banga

Briefings Bioinform., 2022

Designing Effective Playful Collaborative Science Learning in VR.

Jan L. Plass, Ken Perlin, Agnieszka Roginska, Chris Hovey, Fabian Fröhlich, Aniol Saurina Maso, Alvaro Olsen, Zhenyi He, Robert Pahle, Sounak Ghosh

Proceedings of the Serious Games - Joint International Conference, 2022

2021

Combination treatment optimization using a pan-cancer pathway model.

Robin Schmucker, Gabriele Farina, James R. Faeder, Fabian Fröhlich, Ali Sinan Saglam, Tuomas Sandholm

PLoS Comput. Biol., 2021

PEtab - Interoperable specification of parameter estimation problems in systems biology.

Leonard Schmiester, Yannik Schälte, Frank T. Bergmann, Tacio Camba, Erika Dudkin, Janine Egert, Fabian Fröhlich, Lara Fuhrmann, Adrian L. Hauber, Svenja Kemmer, Polina A. Lakrisenko, Carolin Loos, Simon Merkt, Wolfgang Müller, Dilan Pathirana, Elba Raimúndez-Álvarez, Lukas Refisch, Marcus Rosenblatt, Paul Stapor, Philipp Städter, Dantong Wang, Franz-Georg Wieland, Julio R. Banga, Jens Timmer, Alejandro F. Villaverde, Sven Sahle, Clemens Kreutz, Jan Hasenauer, Daniel Weindl

PLoS Comput. Biol., 2021

AMICI: high-performance sensitivity analysis for large ordinary differential equation models.

Fabian Fröhlich, Daniel Weindl, Yannik Schälte, Dilan Pathirana, Lukasz Paszkowski, Glenn Terje Lines, Paul Stapor, Jan Hasenauer

Bioinform., 2021

2020

Efficient parameterization of large-scale dynamic models based on relative measurements.

Leonard Schmiester, Yannik Schälte, Fabian Fröhlich, Jan Hasenauer, Daniel Weindl

Bioinform., 2020

2019

Benchmarking optimization methods for parameter estimation in large kinetic models.

Alejandro Fernández Villaverde, Fabian Fröhlich, Daniel Weindl, Jan Hasenauer, Julio R. Banga

Bioinform., 2019

2018

PESTO: Parameter EStimation TOolbox.

Paul Stapor, Daniel Weindl, Benjamin Ballnus, Sabine Hug, Carolin Loos, Anna Fiedler, Sabrina Krause, Sabrina Hross, Fabian Fröhlich, Jan Hasenauer

Bioinform., 2018

Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis.

Paul Stapor, Fabian Fröhlich, Jan Hasenauer

Bioinform., 2018

GenSSI 2.0: multi-experiment structural identifiability analysis of SBML models.

Thomas S. Ligon, Fabian Fröhlich, Oana Chis, Julio R. Banga, Eva Balsa-Canto, Jan Hasenauer

Bioinform., 2018

2017

Scalable Parameter Estimation for Genome-Scale Biochemical Reaction Networks.

Fabian Fröhlich, Barbara Kaltenbacher, Fabian J. Theis, Jan Hasenauer

PLoS Comput. Biol., 2017

Parameter estimation for dynamical systems with discrete events and logical operations.

Fabian Fröhlich, Fabian J. Theis, Joachim O. Rädler, Jan Hasenauer

Bioinform., 2017

2016

Inference for Stochastic Chemical Kinetics Using Moment Equations and System Size Expansion.

Fabian Fröhlich, Philipp Thomas, Atefeh Kazeroonian, Fabian J. Theis, Ramon Grima, Jan Hasenauer

PLoS Comput. Biol., 2016

2014

Uncertainty Analysis for Non-identifiable Dynamical Systems: Profile Likelihoods, Bootstrapping and More.

Fabian Fröhlich, Fabian J. Theis, Jan Hasenauer

Proceedings of the Computational Methods in Systems Biology, 2014

Radial Basis Function Approximations of Bayesian Parameter Posterior Densities for Uncertainty Analysis.

Fabian Fröhlich, Sabrina Hross, Fabian J. Theis, Jan Hasenauer

Proceedings of the Computational Methods in Systems Biology, 2014