Peter M. Kasson

According to our database1, Peter M. Kasson authored at least 19 papers between 2003 and 2020.

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Bibliography

2020
Adaptive Ensemble Biomolecular Applications at Scale.
SN Comput. Sci., 2020

2018
Implementing Adaptive Ensemble Biomolecular Applications at Scale.
CoRR, 2018

gmxapi: a high-level interface for advanced control and extension of molecular dynamics simulations.
Bioinform., 2018

2016
Excess positional mutual information predicts both local and allosteric mutations affecting beta lactamase drug resistance.
Bioinform., 2016

2013
Lipid Tail Protrusion in Simulations Predicts Fusogenic Activity of Influenza Fusion Peptide Mutants and Conformational Models.
PLoS Comput. Biol., 2013

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit.
Bioinform., 2013

Computational Biology in the Cloud: Methods and New Insights from Computing at Scale.
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013

2011
Copernicus: a new paradigm for parallel adaptive molecular dynamics.
Proceedings of the Conference on High Performance Computing Networking, 2011

2010
Atomic-Resolution Simulations Predict a Transition State for Vesicle Fusion Defined by Contact of a Few Lipid Tails.
PLoS Comput. Biol., 2010

Cross-Graining: Efficient Multi-Scale Simulation via Markov State Models.
Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010

2009
Combining Mutual Information with Structural Analysis to Screen for Functionally Important Residues in Influenza Hemagglutinin.
Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

2007
Control of Membrane Fusion Mechanism by Lipid Composition: Predictions from Ensemble Molecular Dynamics.
PLoS Comput. Biol., 2007

Persistent voids: a new structural metric for membrane fusion.
Bioinform., 2007

Predicting Structure and Dynamics of Loosely-Ordered Protein Complexes: Influenza Hemagglutinin Fusion Peptide.
Proceedings of the Biocomputing 2007, 2007

2005
A hybrid machine-learning approach for segmentation of protein localization data.
Bioinform., 2005

Deformable Modeling for Improved Calculation of Molecular Velocities from Single-Particle Tracking.
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference, 2005

2004
Quantitative analysis of lymphocyte membrane protein redistribution from fluorescence microscopy.
Proceedings of the 2004 International Conference on Image Processing, 2004

Quantitative Analysis of Membrane Protein Localization and Signaling.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

2003
Computational Simulation of Lipid Bilayer Reorientation at Gaps.
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003


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