Shantenu Jha
Orcid: 0000-0002-5040-026XAffiliations:
- Rutgers University, Piscataway, NJ, USA
According to our database1,
Shantenu Jha
authored at least 167 papers
between 2004 and 2024.
Collaborative distances:
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Bibliography
2024
Workflow Mini-Apps: Portable, Scalable, Tunable & Faithful Representations of Scientific Workflows.
CoRR, 2024
2023
Patterns, November, 2023
Adaptive Ensemble Refinement of Protein Structures in High Resolution Electron Microscopy Density Maps with Radical Augmented Molecular Dynamics Flexible Fitting.
J. Chem. Inf. Model., September, 2023
#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol.
Int. J. High Perform. Comput. Appl., 2023
Novel Approaches Toward Scalable Composable Workflows in Hyper-Heterogeneous Computing Environments.
Proceedings of the SC '23 Workshops of The International Conference on High Performance Computing, 2023
Proceedings of the IEEE International Conference on Quantum Software, 2023
Proceedings of the Job Scheduling Strategies for Parallel Processing - 26th Workshop, 2023
Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2023
Building the I (Interoperability) of FAIR for Performance Reproducibility of Large-Scale Composable Workflows in RECUP.
Proceedings of the 19th IEEE International Conference on e-Science, 2023
Proceedings of the 19th IEEE International Conference on e-Science, 2023
2022
Design and Performance Characterization of RADICAL-Pilot on Leadership-Class Platforms.
IEEE Trans. Parallel Distributed Syst., 2022
High-Throughput Virtual Screening and Validation of a SARS-CoV-2 Main Protease Noncovalent Inhibitor.
J. Chem. Inf. Model., 2022
FAIR for AI: An interdisciplinary, international, inclusive, and diverse community building perspective.
CoRR, 2022
CoRR, 2022
Workflows Community Summit: Tightening the Integration between Computing Facilities and Scientific Workflows.
CoRR, 2022
CoRR, 2022
Proceedings of the IEEE/ACM Workshop on Workflows in Support of Large-Scale Science, 2022
RADICAL-Pilot and PMIx/PRRTE: Executing Heterogeneous Workloads at Large Scale on Partitioned HPC Resources.
Proceedings of the Job Scheduling Strategies for Parallel Processing, 2022
Coupling streaming AI and HPC ensembles to achieve 100-1000× faster biomolecular simulations.
Proceedings of the 2022 IEEE International Parallel and Distributed Processing Symposium, 2022
Proceedings of the 18th IEEE International Conference on e-Science, 2022
Proceedings of the 22nd IEEE International Symposium on Cluster, 2022
2021
Int. J. High Perform. Comput. Appl., 2021
Int. J. High Perform. Comput. Appl., 2021
Future Gener. Comput. Syst., 2021
Protein-Ligand Docking Surrogate Models: A SARS-CoV-2 Benchmark for Deep Learning Accelerated Virtual Screening.
CoRR, 2021
Workflows Community Summit: Advancing the State-of-the-art of Scientific Workflows Management Systems Research and Development.
CoRR, 2021
CoRR, 2021
Achieving 100X faster simulations of complex biological phenomena by coupling ML to HPC ensembles.
CoRR, 2021
CoRR, 2021
Pandemic Drugs at Pandemic Speed: Accelerating COVID-19 Drug Discovery with Hybrid Machine Learning- and Physics-based Simulations on High Performance Computers.
CoRR, 2021
Proceedings of the 2021 IEEE Workshop on Workflows in Support of Large-Scale Science (WORKS), 2021
Proceedings of the 2021 IEEE Workshop on Workflows in Support of Large-Scale Science (WORKS), 2021
Proceedings of the PASC '21: Platform for Advanced Scientific Computing Conference, 2021
Proceedings of the IEEE International Parallel and Distributed Processing Symposium Workshops, 2021
Proceedings of the ICPP 2021: 50th International Conference on Parallel Processing, Lemont, IL, USA, August 9, 2021
Proceedings of the 5th IEEE International Conference on Fog and Edge Computing, 2021
Proceedings of the IEEE International Conference on Cluster Computing, 2021
2020
CoRR, 2020
Concurr. Comput. Pract. Exp., 2020
ICEBERG: Imagery Cyber-infrastructure and Extensible Building blocks to Enhance Research in the Geosciences. (A Research Programmer's Perspective).
Proceedings of the PEARC '20: Practice and Experience in Advanced Research Computing, 2020
Methods and Experiences for Developing Abstractions for Data-intensive, Scientific Applications.
Proceedings of the 2020 IEEE International Parallel and Distributed Processing Symposium Workshops, 2020
2019
Comput. Softw. Big Sci., December, 2019
Int. J. High Perform. Comput. Appl., 2019
Comput. Sci. Eng., 2019
Proceedings of the IEEE/ACM Third Annual Workshop on Emerging Parallel and Distributed Runtime Systems and Middleware, 2019
DeepDriveMD: Deep-Learning Driven Adaptive Molecular Simulations for Protein Folding.
Proceedings of the Third IEEE/ACM Workshop on Deep Learning on Supercomputers, 2019
Proceedings of the Parallel Computing: Technology Trends, 2019
Learning Everywhere: Pervasive Machine Learning for Effective High-Performance Computation.
Proceedings of the IEEE International Parallel and Distributed Processing Symposium Workshops, 2019
Proceedings of the 15th International Conference on eScience, 2019
Proceedings of the 15th International Conference on eScience, 2019
Learning Everywhere: A Taxonomy for the Integration of Machine Learning and Simulations.
Proceedings of the 15th International Conference on eScience, 2019
Performance Characterization and Modeling of Serverless and HPC Streaming Applications.
Proceedings of the 2019 IEEE International Conference on Big Data (IEEE BigData), 2019
2018
CoRR, 2018
CoRR, 2018
A parallel unidirectional coupled DEM-PBM model for the efficient simulation of computationally intensive particulate process systems.
Comput. Chem. Eng., 2018
BMC Bioinform., 2018
Proceedings of the Job Scheduling Strategies for Parallel Processing, 2018
Proceedings of the 2018 IEEE International Parallel and Distributed Processing Symposium, 2018
Proceedings of the 47th International Conference on Parallel Processing, 2018
Proceedings of the 14th IEEE International Conference on e-Science, 2018
Proceedings of the 14th IEEE International Conference on e-Science, 2018
Proceedings of the 14th IEEE International Conference on e-Science, 2018
Proceedings of the 14th IEEE International Conference on e-Science, 2018
Proceedings of the 18th IEEE/ACM International Symposium on Cluster, 2018
Enabling Trade-offs Between Accuracy and Computational Cost: Adaptive Algorithms to Reduce Time to Clinical Insight.
Proceedings of the 18th IEEE/ACM International Symposium on Cluster, 2018
2017
CoRR, 2017
CoRR, 2017
On the complexities of utilizing large-scale lightpath-connected distributed cyberinfrastructure.
Concurr. Comput. Pract. Exp., 2017
Introducing distributed dynamic data-intensive (D3) science: Understanding applications and infrastructure.
Concurr. Comput. Pract. Exp., 2017
Proceedings of the 16th Python in Science Conference 2017, 2017
Hacking at the Divide Between Polar Science and HPC: Using Hackathons as Training Tools.
Proceedings of the 2017 IEEE International Parallel and Distributed Processing Symposium Workshops, 2017
Proceedings of the 13th IEEE International Conference on e-Science, 2017
Proceedings of the 13th IEEE International Conference on e-Science, 2017
Conceptualizing a Computing Platform for Science Beyond 2020: To Cloudify HPC, or HPCify Clouds?
Proceedings of the 2017 IEEE 10th International Conference on Cloud Computing (CLOUD), 2017
2016
J. Open Source Softw., 2016
Future Gener. Comput. Syst., 2016
EnsembleMD Toolkit: Scalable and Flexible Execution of Ensembles of Molecular Simulations.
CoRR, 2016
Proceedings of the 2016 IEEE International Parallel and Distributed Processing Symposium, 2016
A Scalable Pipeline for Transcriptome Profiling Tasks with On-Demand Computing Clouds.
Proceedings of the 2016 IEEE International Parallel and Distributed Processing Symposium Workshops, 2016
Proceedings of the 2016 IEEE International Parallel and Distributed Processing Symposium Workshops, 2016
Proceedings of the 2016 IEEE International Parallel and Distributed Processing Symposium Workshops, 2016
RepEx: A Flexible Framework for Scalable Replica Exchange Molecular Dynamics Simulations.
Proceedings of the 45th International Conference on Parallel Processing, 2016
Proceedings of the 45th International Conference on Parallel Processing, 2016
ExTASY: Scalable and flexible coupling of MD simulations and advanced sampling techniques.
Proceedings of the 12th IEEE International Conference on e-Science, 2016
2015
J. Parallel Distributed Comput., 2015
RADICAL-Pilot: Scalable Execution of Heterogeneous and Dynamic Workloads on Supercomputers.
CoRR, 2015
Pilot-Abstraction: A Valid Abstraction for Data-Intensive Applications on HPC, Hadoop and Cloud Infrastructures?
CoRR, 2015
Proceedings of the Big Data Benchmarking, 2015
Proceedings of the 15th IEEE/ACM International Symposium on Cluster, 2015
2014
Comparative analysis of nucleotide translocation through protein nanopores using steered molecular dynamics and an adaptive biasing force.
J. Comput. Chem., 2014
Advancing next-generation sequencing data analytics with scalable distributed infrastructure.
Concurr. Comput. Pract. Exp., 2014
Gateways to high-perfomance and distributed computing resources for global health challenges.
Proceedings of the 2014 IEEE Canada International Humanitarian Technology Conference, 2014
Proceedings of the Big Data and High Performance Computing, 2014
A Tale of Two Data-Intensive Paradigms: Applications, Abstractions, and Architectures.
Proceedings of the 2014 IEEE International Congress on Big Data, Anchorage, AK, USA, June 27, 2014
2013
PLoS Comput. Biol., 2013
Concurr. Comput. Pract. Exp., 2013
Proceedings of the Extreme Science and Engineering Discovery Environment: Gateway to Discovery, 2013
Proceedings of the Extreme Science and Engineering Discovery Environment: Gateway to Discovery, 2013
Proceedings of the 13th IEEE/ACM International Symposium on Cluster, 2013
2012
Distributed Application Runtime Environment (DARE): A Standards-based Middleware Framework for Science-Gateways.
J. Grid Comput., 2012
The anatomy of successful ECSS projects: lessons of supporting high-throughput high-performance ensembles on XSEDE.
Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment, 2012
Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment, 2012
FutureGrid education: using case studies to develop a curriculum for communicating parallel and distributed computing concepts.
Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment, 2012
Proceedings of the 21st International Symposium on High-Performance Parallel and Distributed Computing, 2012
Proceedings of the 8th IEEE International Conference on E-Science, 2012
Proceedings of the 8th IEEE International Conference on E-Science, 2012
2011
Sci. Program., 2011
A practical and comprehensive graduate course preparing students for research involving scientific computing.
Proceedings of the International Conference on Computational Science, 2011
Understanding application-level interoperability: Scaling-out MapReduce over high-performance grids and clouds.
Future Gener. Comput. Syst., 2011
Energy landscape analysis for regulatory RNA finding using scalable distributed cyberinfrastructure.
Concurr. Comput. Pract. Exp., 2011
Building gateways for life-science applications using the dynamic application runtime environment (DARE) framework.
Proceedings of the 2011 TeraGrid Conference - Extreme Digital Discovery, 2011
Towards high-throughput, high-performance computational estimation of binding affinities for patient specific HIV-1 protease sequences.
Proceedings of the 2011 TeraGrid Conference - Extreme Digital Discovery, 2011
Proceedings of the 2011 TeraGrid Conference - Extreme Digital Discovery, 2011
2010
Large scale computational science on federated international grids: The role of switched optical networks.
Future Gener. Comput. Syst., 2010
Modelling data-driven CO<sub>2</sub> sequestration using distributed HPC cyberinfrastructure.
Proceedings of the 2010 TeraGrid Conference, 2010
Proceedings of the International Conference on Computer Graphics and Interactive Techniques, 2010
Exploring application and infrastructure adaptation on hybrid grid-cloud infrastructure.
Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing, 2010
Exploring the RNA folding energy landscape using scalable distributed cyberinfrastructure.
Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing, 2010
Proceedings of the Cloud Computing, Second International Conference, 2010
Proceedings of the Cloud Computing, Second International Conference, 2010
SAGA BigJob: An Extensible and Interoperable Pilot-Job Abstraction for Distributed Applications and Systems.
Proceedings of the 10th IEEE/ACM International Conference on Cluster, 2010
Efficient Runtime Environment for Coupled Multi-physics Simulations: Dynamic Resource Allocation and Load-Balancing.
Proceedings of the 10th IEEE/ACM International Conference on Cluster, 2010
2009
Using clouds to provide grids with higher levels of abstraction and explicit support for usage modes.
Concurr. Comput. Pract. Exp., 2009
Proceedings of the Self-Organizing Architectures, First International Workshop, 2009
Proceedings of the Computational Science, 2009
Proceedings of the 2009 10th IEEE/ACM International Conference on Grid Computing, 2009
Proceedings of the Workshops at the Grid and Pervasive Computing Conference, 2009
A Fresh Perspective on Developing and Executing DAG-Based Distributed Applications: A Case-Study of SAGA-Based Montage.
Proceedings of the Fifth International Conference on e-Science, 2009
Proceedings of the Fifth International Conference on e-Science, 2009
Proceedings of the 2009 IEEE International Conference on Cluster Computing, August 31, 2009
Proceedings of the 9th IEEE/ACM International Symposium on Cluster Computing and the Grid, 2009
2008
Design and performance analysis of a distributed HPC molecular dynamics code on distributed resources.
Proceedings of the 15th ACM Mardi Gras conference: From lightweight mash-ups to lambda grids: Understanding the spectrum of distributed computing requirements, applications, tools, infrastructures, interoperability, and the incremental adoption of key capabilities, Baton Rouge, Louisiana, USA, January 29, 2008
Proceedings of the Euro-Par 2008 Workshops, 2008
Distributed Replica-Exchange Simulations on Production Environments Using SAGA and Migol.
Proceedings of the Fourth International Conference on e-Science, 2008
2007
NEKTAR, SPICE and Vortonics: using federated grids for large scale scientific applications.
Clust. Comput., 2007
Proceedings of the Third International Conference on e-Science and Grid Computing, 2007
Design and Implementation of Network Performance Aware Applications Using SAGA and Cactus.
Proceedings of the Third International Conference on e-Science and Grid Computing, 2007
2006
Proceedings of the Second International Conference on e-Science and Grid Technologies (e-Science 2006), 2006
2005
Force field validation for nucleic acid simulations: Comparing energies and dynamics of a DNA dodecamer.
J. Comput. Chem., 2005
Proceedings of the ACM/IEEE SC2005 Conference on High Performance Networking and Computing, 2005
2004