Shantenu Jha

According to our database1, Shantenu Jha authored at least 80 papers between 2005 and 2019.

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Bibliography

2019
Middleware Building Blocks for Workflow Systems.
Computing in Science and Engineering, 2019

Incorporating Scientific Workflows in Computing Research Processes.
Computing in Science and Engineering, 2019

2018
Synapse: Synthetic application profiler and emulator.
J. Comput. Science, 2018

A Comprehensive Perspective on Pilot-Job Systems.
ACM Comput. Surv., 2018

A parallel unidirectional coupled DEM-PBM model for the efficient simulation of computationally intensive particulate process systems.
Computers & Chemical Engineering, 2018

High-throughput binding affinity calculations at extreme scales.
BMC Bioinformatics, 2018

Using Pilot Systems to Execute Many Task Workloads on Supercomputers.
Proceedings of the Job Scheduling Strategies for Parallel Processing, 2018

Harnessing the Power of Many: Extensible Toolkit for Scalable Ensemble Applications.
Proceedings of the 2018 IEEE International Parallel and Distributed Processing Symposium, 2018

Task-parallel Analysis of Molecular Dynamics Trajectories.
Proceedings of the 47th International Conference on Parallel Processing, 2018

Modeling Impact of Execution Strategies on Resource Utilization.
Proceedings of the 14th IEEE International Conference on e-Science, 2018

Concurrent and Adaptive Extreme Scale Binding Free Energy Calculations.
Proceedings of the 14th IEEE International Conference on e-Science, 2018

Pilot-Streaming: A Stream Processing Framework for High-Performance Computing.
Proceedings of the 14th IEEE International Conference on e-Science, 2018

Towards Exascale Computing for High Energy Physics: The ATLAS Experience at ORNL.
Proceedings of the 14th IEEE International Conference on e-Science, 2018

Building Blocks for Workflow System Middleware.
Proceedings of the 18th IEEE/ACM International Symposium on Cluster, 2018

Enabling Trade-offs Between Accuracy and Computational Cost: Adaptive Algorithms to Reduce Time to Clinical Insight.
Proceedings of the 18th IEEE/ACM International Symposium on Cluster, 2018

2017
On the complexities of utilizing large-scale lightpath-connected distributed cyberinfrastructure.
Concurrency and Computation: Practice and Experience, 2017

Introducing distributed dynamic data-intensive (D3) science: Understanding applications and infrastructure.
Concurrency and Computation: Practice and Experience, 2017

Hacking at the Divide Between Polar Science and HPC: Using Hackathons as Training Tools.
Proceedings of the 2017 IEEE International Parallel and Distributed Processing Symposium Workshops, 2017

Evaluating Distributed Execution of Workloads.
Proceedings of the 13th IEEE International Conference on e-Science, 2017

High-Throughput Computing on High-Performance Platforms: A Case Study.
Proceedings of the 13th IEEE International Conference on e-Science, 2017

Conceptualizing a Computing Platform for Science Beyond 2020: To Cloudify HPC, or HPCify Clouds?
Proceedings of the 2017 IEEE 10th International Conference on Cloud Computing (CLOUD), 2017

2016
Application Skeleton: Generating Synthetic Applications for Infrastructure Research.
J. Open Source Software, 2016

Application skeletons: Construction and use in eScience.
Future Generation Comp. Syst., 2016

Integrating Abstractions to Enhance the Execution of Distributed Applications.
Proceedings of the 2016 IEEE International Parallel and Distributed Processing Symposium, 2016

A Scalable Pipeline for Transcriptome Profiling Tasks with On-Demand Computing Clouds.
Proceedings of the 2016 IEEE International Parallel and Distributed Processing Symposium Workshops, 2016

Synapse: Synthetic Application Profiler and Emulator.
Proceedings of the 2016 IEEE International Parallel and Distributed Processing Symposium Workshops, 2016

Hadoop on HPC: Integrating Hadoop and Pilot-Based Dynamic Resource Management.
Proceedings of the 2016 IEEE International Parallel and Distributed Processing Symposium Workshops, 2016

RepEx: A Flexible Framework for Scalable Replica Exchange Molecular Dynamics Simulations.
Proceedings of the 45th International Conference on Parallel Processing, 2016

Ensemble Toolkit: Scalable and Flexible Execution of Ensembles of Tasks.
Proceedings of the 45th International Conference on Parallel Processing, 2016

ExTASY: Scalable and flexible coupling of MD simulations and advanced sampling techniques.
Proceedings of the 12th IEEE International Conference on e-Science, 2016

2015
Pilot-Data: An abstraction for distributed data.
J. Parallel Distrib. Comput., 2015

Big Data, Simulations and HPC Convergence.
Proceedings of the Big Data Benchmarking, 2015

HPC-ABDS High Performance Computing Enhanced Apache Big Data Stack.
Proceedings of the 15th IEEE/ACM International Symposium on Cluster, 2015

2014
Comparative analysis of nucleotide translocation through protein nanopores using steered molecular dynamics and an adaptive biasing force.
Journal of Computational Chemistry, 2014

Advancing next-generation sequencing data analytics with scalable distributed infrastructure.
Concurrency and Computation: Practice and Experience, 2014

Gateways to high-perfomance and distributed computing resources for global health challenges.
Proceedings of the 2014 IEEE Canada International Humanitarian Technology Conference, 2014

Towards a Comprehensive Set of Big Data Benchmarks.
Proceedings of the Big Data and High Performance Computing, 2014

A Tale of Two Data-Intensive Paradigms: Applications, Abstractions, and Architectures.
Proceedings of the 2014 IEEE International Congress on Big Data, Anchorage, AK, USA, June 27, 2014

2013
The Impact of a Ligand Binding on Strand Migration in the SAM-I Riboswitch.
PLoS Computational Biology, 2013

Distributed computing practice for large-scale science and engineering applications.
Concurrency and Computation: Practice and Experience, 2013

Scalable online comparative genomics of mononucleosomes: a BigJob.
Proceedings of the Extreme Science and Engineering Discovery Environment: Gateway to Discovery, 2013

A framework for flexible and scalable replica-exchange on production distributed CI.
Proceedings of the Extreme Science and Engineering Discovery Environment: Gateway to Discovery, 2013

Exploring Dynamic Enactment of Scientific Workflows Using Pilot-Abstractions.
Proceedings of the 13th IEEE/ACM International Symposium on Cluster, 2013

2012
Distributed Application Runtime Environment (DARE): A Standards-based Middleware Framework for Science-Gateways.
J. Grid Comput., 2012

Towards a common model for pilot-jobs.
Proceedings of the 21st International Symposium on High-Performance Parallel and Distributed Computing, 2012

Pilot abstractions for compute, data, and network.
Proceedings of the 8th IEEE International Conference on E-Science, 2012

P∗: A model of pilot-abstractions.
Proceedings of the 8th IEEE International Conference on E-Science, 2012

2011
Autonomic management of application workflows on hybrid computing infrastructure.
Scientific Programming, 2011

A practical and comprehensive graduate course preparing students for research involving scientific computing.
Proceedings of the International Conference on Computational Science, 2011

Understanding application-level interoperability: Scaling-out MapReduce over high-performance grids and clouds.
Future Generation Comp. Syst., 2011

Energy landscape analysis for regulatory RNA finding using scalable distributed cyberinfrastructure.
Concurrency and Computation: Practice and Experience, 2011

2010
Large scale computational science on federated international grids: The role of switched optical networks.
Future Generation Comp. Syst., 2010

Global-scale distributed I/O with ParaMEDIC.
Concurrency and Computation: Practice and Experience, 2010

GRENDL: grid enabled distribution and control for Laptop Orchestras.
Proceedings of the International Conference on Computer Graphics and Interactive Techniques, 2010

Exploring application and infrastructure adaptation on hybrid grid-cloud infrastructure.
Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing, 2010

Exploring the RNA folding energy landscape using scalable distributed cyberinfrastructure.
Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing, 2010

Abstractions for Loosely-Coupled and Ensemble-Based Simulations on Azure.
Proceedings of the Cloud Computing, Second International Conference, 2010

Exploring the Performance Fluctuations of HPC Workloads on Clouds.
Proceedings of the Cloud Computing, Second International Conference, 2010

SAGA BigJob: An Extensible and Interoperable Pilot-Job Abstraction for Distributed Applications and Systems.
Proceedings of the 10th IEEE/ACM International Conference on Cluster, 2010

Efficient Runtime Environment for Coupled Multi-physics Simulations: Dynamic Resource Allocation and Load-Balancing.
Proceedings of the 10th IEEE/ACM International Conference on Cluster, 2010

2009
Using clouds to provide grids with higher levels of abstraction and explicit support for usage modes.
Concurrency and Computation: Practice and Experience, 2009

Self-adaptive Architectures for Autonomic Computational Science.
Proceedings of the Self-Organizing Architectures, First International Workshop, 2009

Developing Scientific Applications with Loosely-Coupled Sub-tasks.
Proceedings of the Computational Science, 2009

Critical perspectives on large-scale distributed applications and production Grids.
Proceedings of the 2009 10th IEEE/ACM International Conference on Grid Computing, 2009

Application Level Interoperability between Clouds and Grids.
Proceedings of the Workshops at the Grid and Pervasive Computing Conference, 2009

Introduction.
Proceedings of the Euro-Par 2009 Parallel Processing, 2009

A Fresh Perspective on Developing and Executing DAG-Based Distributed Applications: A Case-Study of SAGA-Based Montage.
Proceedings of the Fifth International Conference on e-Science, 2009

An Autonomic Approach to Integrated HPC Grid and Cloud Usage.
Proceedings of the Fifth International Conference on e-Science, 2009

An innovative application execution toolkit for multicluster grids.
Proceedings of the 2009 IEEE International Conference on Cluster Computing, August 31, 2009

Programming Abstractions for Data Intensive Computing on Clouds and Grids.
Proceedings of the 9th IEEE/ACM International Symposium on Cluster Computing and the Grid, 2009

2008
Design and performance analysis of a distributed HPC molecular dynamics code on distributed resources.
Proceedings of the 15th ACM Mardi Gras conference: From lightweight mash-ups to lambda grids: Understanding the spectrum of distributed computing requirements, applications, tools, infrastructures, interoperability, and the incremental adoption of key capabilities, Baton Rouge, Louisiana, USA, January 29, 2008

Abstractions for Distributed Systems (DPA 2008).
Proceedings of the Euro-Par 2008 Workshops, 2008

Distributed Replica-Exchange Simulations on Production Environments Using SAGA and Migol.
Proceedings of the Fourth International Conference on e-Science, 2008

2007
Grid Interoperability at the Application Level Using SAGA.
Proceedings of the Third International Conference on e-Science and Grid Computing, 2007

Design and Implementation of Network Performance Aware Applications Using SAGA and Cactus.
Proceedings of the Third International Conference on e-Science and Grid Computing, 2007

2006
Using Lambda Networks to Enhance Performance of Interactive Large Simulations.
Proceedings of the Second International Conference on e-Science and Grid Technologies (e-Science 2006), 2006

NEKTAR, SPICE and Vortonics: using federated grids for large scale scientific applications.
Proceedings of the 2006 IEEE Challenges of Large Applications in Distributed Environments, 2006

2005
Force field validation for nucleic acid simulations: Comparing energies and dynamics of a DNA dodecamer.
Journal of Computational Chemistry, 2005

Scientific grid computing: the first generation.
Computing in Science and Engineering, 2005

SPICE: Simulated Pore Interactive Computing Environment.
Proceedings of the ACM/IEEE SC2005 Conference on High Performance Networking and Computing, 2005


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