Pier Federico Gherardini

According to our database, Pier Federico Gherardini authored at least 9 papers between 2007 and 2018.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2018

GateFinder: projection-based gating strategy optimization for flow and mass cytometry.

Nima Aghaeepour, Erin F. Simonds, David J. H. F. Knapp, Robert V. Bruggner, Karen Sachs, Anthony Culos, Pier Federico Gherardini, Nikolay Samusik, Gabriela K. Fragiadakis, Sean Bendall, Brice Gaudilliere, Martin S. Angst, Connie J. Eaves, William A. Weiss, Wendy J. Fantl, Garry P. Nolan

Bioinform., 2018

2012

Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities.

Valerio Bianchi, Pier Federico Gherardini, Manuela Helmer-Citterich, Gabriele Ausiello

BMC Bioinform., 2012

2011

Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites.

Andreas Zanzoni, Daniel Carbajo, Francesca Diella, Pier Federico Gherardini, Anna Tramontano, Manuela Helmer-Citterich, Allegra Via

Nucleic Acids Res., 2011

Phosfinder: a web server for the identification of phosphate-binding sites on protein structures.

Luca Parca, Iolanda Mangone, Pier Federico Gherardini, Gabriele Ausiello, Manuela Helmer-Citterich

Nucleic Acids Res., 2011

2009

Structural motifs recurring in different folds recognize the same ligand fragments.

Gabriele Ausiello, Pier Federico Gherardini, Elena Gatti, Ottaviano Incani, Manuela Helmer-Citterich

BMC Bioinform., 2009

2008

FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures.

Gabriele Ausiello, Pier Federico Gherardini, Paolo Marcatili, Anna Tramontano, Allegra Via, Manuela Helmer-Citterich

BMC Bioinform., 2008

2007

Phospho3D: a database of three-dimensional structures of protein phosphorylation sites.

Andreas Zanzoni, Gabriele Ausiello, Allegra Via, Pier Federico Gherardini, Manuela Helmer-Citterich

Nucleic Acids Res., 2007

3dLOGO: a web server for the identification, analysis and use of conserved protein substructures.

Allegra Via, Daniele Peluso, Pier Federico Gherardini, Emanuele de Rinaldis, Teresa Colombo, Gabriele Ausiello, Manuela Helmer-Citterich

Nucleic Acids Res., 2007

False occurrences of functional motifs in protein sequences highlight evolutionary constraints.

Allegra Via, Pier Federico Gherardini, Enrico Ferraro, Gabriele Ausiello, Gianpaolo Scalia Tomba, Manuela Helmer-Citterich

BMC Bioinform., 2007