Pirooz Vakili

According to our database1, Pirooz Vakili authored at least 30 papers between 1991 and 2016.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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PhD thesis 
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Bibliography

2016
Focused grid-based resampling for protein docking and mapping.
J. Comput. Chem., 2016

2015
The Impact of Side-Chain Packing on Protein Docking Refinement.
J. Chem. Inf. Model., 2015

2014
Optimization on the space of rigid and flexible motions: An alternative manifold optimization approach.
Proceedings of the 53rd IEEE Conference on Decision and Control, 2014

A Subspace Semi-Definite programming-based Underestimation (SSDU) method for stochastic global optimization in protein docking.
Proceedings of the 53rd IEEE Conference on Decision and Control, 2014

2013
A new distributed algorithm for side-chain positioning in the process of protein docking.
Proceedings of the 52nd IEEE Conference on Decision and Control, 2013

Flexible refinement of protein-ligand docking on manifolds.
Proceedings of the 52nd IEEE Conference on Decision and Control, 2013

2012
A message passing approach to Side Chain Positioning with applications in protein docking refinement.
Proceedings of the 51th IEEE Conference on Decision and Control, 2012

A new approach to rigid body minimization with application to molecular docking.
Proceedings of the 51th IEEE Conference on Decision and Control, 2012

2010
Importance sampling for parametric estimation.
Proceedings of the 2010 Winter Simulation Conference, 2010

Control variates for sensitivity estimation.
Proceedings of the 2010 Winter Simulation Conference, 2010

2008
Protein Docking by the Underestimation of Free Energy Funnels in the Space of Encounter Complexes.
PLoS Comput. Biol., 2008

A Control Variate Approach for Improving Efficiency of Ensemble Monte Carlo
CoRR, 2008

Monotonicity and stratification.
Proceedings of the 2008 Winter Simulation Conference, Global Gateway to Discovery, 2008

Control variate technique: A constructive approach.
Proceedings of the 2008 Winter Simulation Conference, Global Gateway to Discovery, 2008

2007
SDU: A Semidefinite Programming-Based Underestimation Method for Stochastic Global Optimization in Protein Docking.
IEEE Trans. Autom. Control., 2007

Efficient estimation of option price and price sensitivities via structured database Monte Carlo (SDMC).
Proceedings of the Winter Simulation Conference, 2007

Optimizing noisy funnel-like functions on the euclidean group with applications to protein docking.
Proceedings of the 46th IEEE Conference on Decision and Control, 2007

2006
A new efficient simulation strategy for pricing path-dependent options.
Proceedings of the Winter Simulation Conference WSC 2006, 2006

Protein-protein docking with reduced potentials by exploiting multi-dimensional energy funnels.
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006

2005
On the Value of Flexibility in R&D Projects.
Manag. Sci., 2005

2004
Capacity and Production Managment in a Single Product Manufacturing System.
Ann. Oper. Res., 2004

1999
Optimality of index policies for a sequential sampling problem.
IEEE Trans. Autom. Control., 1999

A Non-myopic Utility Function for Statistical Global Optimization Algorithms.
J. Glob. Optim., 1999

1996
Variance reduction algorithms for parallel replicated simulation of uniformized Markov chains.
Discret. Event Dyn. Syst., 1996

1995
Variance Reduction for Discrete Event Systems Driven by Poisson Processes.
Proceedings of the 27th conference on Winter simulation, 1995

1994
Uniformization based sensitivity estimation for a class of discrete-event systems.
Discret. Event Dyn. Syst., 1994

1993
Parallel replicated simulation of Markov chains: implementation and variance reduction.
Proceedings of the 25th Winter Simulation Conference, 1993

1992
Massively Parallel and Distributed Simulation of a Class of Discrete Event Systems: A Different Perspective.
ACM Trans. Model. Comput. Simul., 1992

Correlation of Markov Chains Simulated in Parallel.
Proceedings of the 24th Winter Simulation Conference, 1992

1991
Using a standard clock technique for efficient simulation.
Oper. Res. Lett., 1991


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