Radhakrishnan Mahadevan

According to our database1, Radhakrishnan Mahadevan authored at least 20 papers between 1999 and 2021.

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Bibliography

2021
Integration of a physiologically-based pharmacokinetic model with a whole-body, organ-resolved genome-scale model for characterization of ethanol and acetaldehyde metabolism.
PLoS Comput. Biol., 2021

A gap-filling algorithm for prediction of metabolic interactions in microbial communities.
PLoS Comput. Biol., 2021

Physiologically-based pharmacokinetic model for predicting blood and tissue tetrahydrocannabinol concentrations.
Comput. Chem. Eng., 2021

Enzyme Activity Prediction of Sequence Variants on Novel Substrates using Improved Substrate Encodings and Convolutional Pooling.
Proceedings of the Machine Learning in Computational Biology Meeting, 2021

2020
Speeding up the core algorithm for the dual calculation of minimal cut sets in large metabolic networks.
BMC Bioinform., 2020

2019
A multi-scale model for low-density lipoprotein cholesterol (LDL-C) regulation in the human body: Application to quantitative systems pharmacology.
Comput. Chem. Eng., 2019

A scalable method for parameter identification in kinetic models of metabolism using steady-state data.
Bioinform., 2019

AYbRAH: a curated ortholog database for yeasts and fungi spanning 600 million years of evolution.
Database J. Biol. Databases Curation, 2019

2018
Model-based design of bistable cell factories for metabolic engineering.
Bioinform., 2018

2017
From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints.
PLoS Comput. Biol., 2017

2015
Genome-scale strain designs based on regulatory minimal cut sets.
Bioinform., 2015

2010
Characterizing the Metabolism of <i>Dehalococcoides</i> with a Constraint-Based Model.
PLoS Comput. Biol., 2010

Designing experiments from noisy metabolomics data to refine constraint-based models.
Proceedings of the American Control Conference, 2010

2009
Genome-scale constraint-based modeling of Geobacter metallireducens.
BMC Syst. Biol., 2009

2008
Computational and Experimental Analysis of Redundancy in the Central Metabolism of <i>Geobacter sulfurreducens</i>.
PLoS Comput. Biol., 2008

A bilevel optimization algorithm to identify enzymatic capacity constraints in metabolic networks.
Comput. Chem. Eng., 2008

Genome Regions Involved in Multiple Regulatory Pathways Identified Using GSEL, A Genome-Wide Database of Regulatory Sequence Elements of Geobacter sulfurreducens.
Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics, 2008

2006
Optimal genetic manipulations in batch bioreactor control.
Autom., 2006

2005
Batch control of genetic alterations for optimal metabolic engineering.
Proceedings of the American Control Conference, 2005

1999
Nonlinear nonsquare control of a continuous bioreactor using flat outputs.
Proceedings of the 5th European Control Conference, 1999


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