Ralf Herwig

According to our database, Ralf Herwig authored at least 23 papers between 2000 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

ConsensusPathDB 2022: molecular interactions update as a resource for network biology.

Atanas Kamburov, Ralf Herwig

Nucleic Acids Res., 2022

A bioinformatics workflow to detect genes with DNA methylation alterations: a case study of analyzing MeDIP-seq data in cardiac microtissue exposed to epirubicin.

Nhan Nguyen, Matthias Lienhard, Ralf Herwig, Jos Kleinjans, Danyel Jennen

Proceedings of the ICBBB 2022: 12th International Conference on Bioscience, Biochemistry and Bioinformatics, Tokyo, Japan, January 7, 2022

2016

ToxDB: pathway-level interpretation of drug-treatment data.

Christopher Hardt, Moritz Emanuel Beber, Axel Rasche, Atanas Kamburov, Dennie G. A. J. Hebels, Jos C. S. Kleinjans, Ralf Herwig

Database J. Biol. Databases Curation, 2016

2015

diXa: a data infrastructure for chemical safety assessment.

Diana M. Hendrickx, Hugo J. W. L. Aerts, Florian Caiment, Dominic Clark, Timothy M. D. Ebbels, Chris T. A. Evelo, Hans Gmuender, Dennie G. A. J. Hebels, Ralf Herwig, Jürgen Hescheler, Danyel G. J. Jennen, Marlon J. A. Jetten, Stathis Kanterakis, Hector C. Keun, Vera Matser, John P. Overington, Ekaterina Pilicheva, Ugis Sarkans, Marcelo P. Segura-Lepe, Isaia Sotiriadou, Timo Wittenberger, Clemens Wittwehr, Antonella Zanzi, Jos C. S. Kleinjans

Bioinform., 2015

2014

MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments.

Matthias Lienhard, Christina Grimm, Markus Morkel, Ralf Herwig, Lukas Chavez

Bioinform., 2014

2013

The ConsensusPathDB interaction database: 2013 update.

Atanas Kamburov, Ulrich Stelzl, Hans Lehrach, Ralf Herwig

Nucleic Acids Res., 2013

2012

IntScore: a web tool for confidence scoring of biological interactions.

Atanas Kamburov, Ulrich Stelzl, Ralf Herwig

Nucleic Acids Res., 2012

Cluster-based assessment of protein-protein interaction confidence.

Atanas Kamburov, Arndt Grossmann, Ralf Herwig, Ulrich Stelzl

BMC Bioinform., 2012

DIPSBC - data integration platform for systems biology collaborations.

Felix Dreher, Thomas Kreitler, Christopher Hardt, Atanas Kamburov, Reha Yildirimman, Karl Schellander, Hans Lehrach, Bodo M. H. Lange, Ralf Herwig

BMC Bioinform., 2012

2011

Consensus-Phenotype Integration of Transcriptomic and Metabolomic Data Implies a Role for Metabolism in the Chemosensitivity of Tumour Cells.

Rachel Cavill, Atanas Kamburov, James K. Ellis, Toby J. Athersuch, Marcus S. C. Blagrove, Ralf Herwig, Timothy M. D. Ebbels, Hector C. Keun

PLoS Comput. Biol., 2011

ConsensusPathDB: toward a more complete picture of cell biology.

Atanas Kamburov, Konstantin Pentchev, Hanna Galicka, Christoph K. Wierling, Hans Lehrach, Ralf Herwig

Nucleic Acids Res., 2011

Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA.

Atanas Kamburov, Rachel Cavill, Timothy M. D. Ebbels, Ralf Herwig, Hector C. Keun

Bioinform., 2011

2010

ARH: predicting splice variants from genome-wide data with modified entropy.

Axel Rasche, Ralf Herwig

Bioinform., 2010

Evidence mining and novelty assessment of protein-protein interactions with the ConsensusPathDB plugin for Cytoscape.

Konstantin Pentchev, Keiichiro Ono, Ralf Herwig, Trey Ideker, Atanas Kamburov

Bioinform., 2010

2009

ConsensusPathDB - a database for integrating human functional interaction networks.

Atanas Kamburov, Christoph K. Wierling, Hans Lehrach, Ralf Herwig

Nucleic Acids Res., 2009

Reverse Engineering of Gene Regulatory Networks: A Comparative Study.

Hendrik Hache, Hans Lehrach, Ralf Herwig

EURASIP J. Bioinform. Syst. Biol., 2009

GeNGe: systematic generation of gene regulatory networks.

Hendrik Hache, Christoph K. Wierling, Hans Lehrach, Ralf Herwig

Bioinform., 2009

2007

T2DM-GeneMiner a web resource for meta-analysis and marker identification for type 2 diabetes mellitus.

Axel Rasche, Ralf Herwig

BMC Bioinform., 2007

2005

Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process.

Witold E. Wolski, Maciej Lalowski, Peter Martus, Ralf Herwig, Patrick Giavalisco, Johan Gobom, Albert Sickmann, Hans Lehrach, Knut Reinert

BMC Bioinform., 2005

2003

Exploring potential target genes of signaling pathways by predicting conserved transcription factor binding sites.

Christoph Dieterich, Ralf Herwig, Martin Vingron

Proceedings of the European Conference on Computational Biology (ECCB 2003), 2003

2002

Simulation of DNA array hybridization experiments and evaluation of critical parameters during subsequent image and data analysis.

Christoph K. Wierling, Matthias Steinfath, Thorsten Elge, Steffen Schulze-Kremer, Pia Aanstad, Matthew Clark, Hans Lehrach, Ralf Herwig

BMC Bioinform., 2002

2000

Information theoretical probe selection for hybridisation experiments.

Ralf Herwig, Armin Otto Schmitt, Matthias Steinfath, John O'Brien, Henrik Seidel, Sebastian Meier-Ewert, Hans Lehrach, Uwe Radelof

Bioinform., 2000

A data-analysis pipeline for large-scale gene expression analysis.

Steffen Hennig, Ralf Herwig, Matthew Clark, Pia Aanstad, A. Musa, John O'Brien, C. Bull, Uwe Radelof, Georgia Panopoulou, Albert J. Poustka, Hans Lehrach

Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 2000