Wyeth W. Wasserman

According to our database1, Wyeth W. Wasserman authored at least 33 papers between 2002 and 2019.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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PhD thesis 
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Bibliography

2019
Development and user evaluation of a rare disease gene prioritization workflow based on cognitive ergonomics.
JAMIA, 2019

Gene expression models based on transcription factor binding events confer insight into functional cis-regulatory variants.
Bioinformatics, 2019

TFEA.ChIP: a tool kit for transcription factor binding site enrichment analysis capitalizing on ChIP-seq datasets.
Bioinformatics, 2019

2018
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.
Nucleic Acids Research, 2018

Genome-wide prediction of cis-regulatory regions using supervised deep learning methods.
BMC Bioinformatics, 2018

2016
JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles.
Nucleic Acids Research, 2016

Deep Feature Selection: Theory and Application to Identify Enhancers and Promoters.
Journal of Computational Biology, 2016

Dynamic software design for clinical exome and genome analyses: insights from bioinformaticians, clinical geneticists, and genetic counselors.
JAMIA, 2016

CAGEd-oPOSSUM: motif enrichment analysis from CAGE-derived TSSs.
Bioinformatics, 2016

2015
The identification of cis-regulatory elements: A review from a machine learning perspective.
Biosyst., 2015

2014
A promoter-level mammalian expression atlas.
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Nature, 2014

NAR Breakthrough Article: TFBSshape: a motif database for DNA shape features of transcription factor binding sites.
Nucleic Acids Research, 2014

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles.
Nucleic Acids Research, 2014

Usability study of clinical exome analysis software: Top lessons learned and recommendations.
J. Biomed. Informatics, 2014

2013
The Next Generation of Transcription Factor Binding Site Prediction.
PLoS Computational Biology, 2013

2012
Quantitative biomedical annotation using medical subject heading over-representation profiles (MeSHOPs).
BMC Bioinformatics, 2012

2011
Validation of Skeletal Muscle cis-Regulatory Module Predictions Reveals Nucleotide Composition Bias in Functional Enhancers.
PLoS Computational Biology, 2011

MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model.
BMC Bioinformatics, 2011

2010
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles.
Nucleic Acids Research, 2010

2009
The PAZAR database of gene regulatory information coupled to the ORCA toolkit for the study of regulatory sequences.
Nucleic Acids Research, 2009

2008
In Silico Detection of Sequence Variations Modifying Transcriptional Regulation.
PLoS Computational Biology, 2008

ORegAnno: an open-access community-driven resource for regulatory annotation.
Nucleic Acids Research, 2008

2007
oPOSSUM: integrated tools for analysis of regulatory motif over-representation.
Nucleic Acids Research, 2007

2006
SAGE2Splice: Unmapped SAGE Tags Reveal Novel Splice Junctions.
PLoS Computational Biology, 2006

A new generation of JASPAR, the open-access repository for transcription factor binding site profiles.
Nucleic Acids Research, 2006

Visualization of complementary systems biology data with parallel heatmaps.
IBM Journal of Research and Development, 2006

Identification of Over-Represented Combinations of Transcription Factor Binding Sites in Sets of Co-Expressed Genes.
Proceedings of 4th Asia-Pacific Bioinformatics Conference. 13-16 February 2006, 2006

2005
The Gene Set Builder: collation, curation, and distribution of sets of genes.
BMC Bioinformatics, 2005

2004
ConSite: web-based prediction of regulatory elements using cross-species comparison.
Nucleic Acids Research, 2004

JASPAR: an open-access database for eukaryotic transcription factor binding profiles.
Nucleic Acids Research, 2004

MSCAN: identification of functional clusters of transcription factor binding sites.
Nucleic Acids Research, 2004

2003
Identification of functional clusters of transcription factor binding motifs in genome sequences: the MSCAN algorithm.
Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

2002
TFBS: Computational framework for transcription factor binding site analysis.
Bioinformatics, 2002


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