Rency S. Varghese

According to our database, Rency S. Varghese authored at least 23 papers between 2003 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Deep Learning Based Metabolite Annotation.

Hoi Yan Katharine Chau, Hongyu Ao, Xinran Zhang, Shijinqiu Gao, Rency S. Varghese, Habtom W. Ressom

Proceedings of the 45th Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2023

Bayesian Approach Integrating Prior Knowledge for Identifying miRNA-mRNA Interactions in Hepatocellular Carcinoma.

Yichen Guo, Marie Denis, Rency S. Varghese, Sidharth S. Jain, Mahlet G. Tadesse, Habtom W. Ressom

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022

A Bayesian two-step integrative procedure incorporating prior knowledge for the identification of miRNA-mRNAs involved in hepatocellular carcinoma.

Marie Denis, Rency S. Varghese, Megan E. Barefoot, Mahlet G. Tadesse, Habtom W. Ressom

Proceedings of the 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2022

Cell-type Deconvolution and Age Estimation Using DNA Methylation Reveals NK Cell Deficiency in the Hepatocellular Carcinoma Microenvironment.

Sidharth S. Jain, Megan E. Barefoot, Rency S. Varghese, Habtom W. Ressom

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2020

Epigenetic changes associated with mechanisms of disparities in hepatocellular carcinoma.

Rency S. Varghese, Yuan Zhou, Yifan Chen, Megan E. Barefoot, Mahlet G. Tadesse, Habtom W. Ressom

Proceedings of the 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2020

Integrative Analysis to Identify Race-Associated Metabolite Biomarkers for Hepatocellular Carcinoma.

Yifan Chen, Megan E. Barefoot, Rency S. Varghese, Kuijun Wang, Cristina Di Poto, Habtom W. Ressom

Proceedings of the 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2020

2019

Multi-omic Pathway and Network Analysis to Identify Biomarkers for Hepatocellular Carcinoma.

Megan E. Barefoot, Rency S. Varghese, Yuan Zhou, Cristina Di Poto, Alessia Ferrarini, Habtom W. Ressom

Proceedings of the 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2019

Integrative Analysis of DNA Methylation and Gene Expression Patterns in Tissues from Hepatocellular Carcinoma Patients.

Megan E. Barefoot, Yifan Chen, Rency S. Varghese, Yuan Zhou, Habtom W. Ressom

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018

INDEED: R package for network based differential expression analysis.

Zhenzhi Li, Yiming Zuo, Chaohui Xu, Rency S. Varghese, Habtom W. Ressom

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2016

Multi-omic approaches for characterization of hepatocellular carcinoma.

Habtom W. Ressom, Cristina Di Poto, Alessia Ferrarini, Yunli Hu, Mohammad R. Nezami Ranjbar, Ehwang Song, Rency S. Varghese, Minkun Wang, Shiyue Zhou, Rui Zhu, Yiming Zuo, Mahlet G. Tadesse, Yehia Mechref

Proceedings of the 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2016

Network-based analysis of reverse phase protein array data.

Rency S. Varghese, Yiming Zuo, Yi Zhao, Yong-Wei Zhang, Sandra A. Jablonski, Mariaelena Pierobon, Emanuel F. Petricoin, Habtom W. Ressom, Louis M. Weiner

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2011

Meta-analysis of LC-MS based metabolomic experiments.

Rency S. Varghese, Bin Zhou, Habtom W. Ressom

Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

2010

Using a spike-in experiment to evaluate analysis of LC-MS data.

Leepika Tuli, Tsung-Heng Tsai, Rency S. Varghese, Amrita K. Cheema, Habtom W. Ressom

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

2008

Analysis of MALDI-TOF Spectrometry Data for Detection of Glycan Biomarkers.

Habtom W. Ressom, Rency S. Varghese, Lenka Goldman, Christopher A. Loffredo, Mohamed Abdel-Hamid, Zuzana Kyselova, Yehia Mechref, Milos V. Novotny, Radoslav Goldman

Proceedings of the Biocomputing 2008, 2008

2007

Peak selection from MALDI-TOF mass spectra using ant colony optimization.

Habtom W. Ressom, Rency S. Varghese, Steven K. Drake, Glen L. Hortin, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman

Bioinform., 2007

2006

Ant Colony Optimization for Biomarker Identification from MALDI-TOF Mass Spectra.

Habtom W. Ressom, Rency S. Varghese, Eduard Orvisky, Steven K. Drake, Glen L. Hortin, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman

Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006

Biomarker Identification and Rule Extraction from Mass Spectral Serum Profiles.

Habtom W. Ressom, Rency S. Varghese, Eduard Orvisky, Steven K. Drake, Glen L. Hortin, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman

Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006

2005

Applications of fuzzy logic in genomics.

Habtom W. Ressom, Padma Natarajan, Rency S. Varghese, Mohamad T. Musavi

Fuzzy Sets Syst., 2005

Analysis of mass spectral serum profiles for biomarker selection.

Habtom W. Ressom, Rency S. Varghese, Mohamed Abdel-Hamid, Sohair Abdel-Latif Eissa, Daniel Saha, Lenka Goldman, Emanuel F. Petricoin, Thomas P. Conrads, Timothy D. Veenstra, Christopher A. Loffredo, Radoslav Goldman

Bioinform., 2005

Particle swarm optimization for analysis of mass spectral serum profiles.

Habtom W. Ressom, Rency S. Varghese, Daniel Saha, Eduard Orvisky, Lenka Goldman, Emanuel F. Petricoin, Thomas P. Conrads, Timothy D. Veenstra, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman

Proceedings of the Genetic and Evolutionary Computation Conference, 2005

Analysis of MALDI-TOF Serum Profiles for Biomarker Selection and Sample Classification.

Habtom W. Ressom, Rency S. Varghese, Eduard Orvisky, Steven K. Drake, Glen L. Hortin, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman

Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005

2004

A fuzzy confidence value for DNA bases.

Rency Susan Varghese, Mohamad T. Musavi, Habtom W. Ressom

Proceedings of the IEEE International Conference on Fuzzy Systems, 2004

2003

Fuzzy logic-based gene regulatory network.

Habtom W. Ressom, Dali Wang, Rency S. Varghese, Robert Reynolds

Proceedings of the 12th IEEE International Conference on Fuzzy Systems, 2003