Habtom W. Ressom

Orcid: 0000-0001-9296-2132

According to our database1, Habtom W. Ressom authored at least 77 papers between 1997 and 2023.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

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Bibliography

2023
Deep Learning Based Metabolite Annotation.
Proceedings of the 45th Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2023

Bayesian Approach Integrating Prior Knowledge for Identifying miRNA-mRNA Interactions in Hepatocellular Carcinoma.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022
A Bayesian two-step integrative procedure incorporating prior knowledge for the identification of miRNA-mRNAs involved in hepatocellular carcinoma.
Proceedings of the 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2022

Cell-type Deconvolution and Age Estimation Using DNA Methylation Reveals NK Cell Deficiency in the Hepatocellular Carcinoma Microenvironment.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2020
Epigenetic changes associated with mechanisms of disparities in hepatocellular carcinoma.
Proceedings of the 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2020

Integrative Analysis to Identify Race-Associated Metabolite Biomarkers for Hepatocellular Carcinoma.
Proceedings of the 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2020

2019
MOTA: Multi-omic integrative analysis for biomarker discovery.
Proceedings of the 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2019

Multi-omic Pathway and Network Analysis to Identify Biomarkers for Hepatocellular Carcinoma.
Proceedings of the 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2019

Metabolite Identification Using Artificial Neural Network.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

Integrative Analysis of DNA Methylation and Gene Expression Patterns in Tissues from Hepatocellular Carcinoma Patients.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018
INDEED: R package for network based differential expression analysis.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017
Incorporating prior biological knowledge for network-based differential gene expression analysis using differentially weighted graphical LASSO.
BMC Bioinform., 2017

2016
Integrative Analysis of Proteomic, Glycomic, and Metabolomic Data for Biomarker Discovery.
IEEE J. Biomed. Health Informatics, 2016

Multi-omic approaches for characterization of hepatocellular carcinoma.
Proceedings of the 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2016

Metabolomic data deconvolution using probabilistic purification models.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Network-based analysis of reverse phase protein array data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015
Bayesian Normalization Model for Label-Free Quantitative Analysis by LC-MS.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015

SIMAT: GC-SIM-MS data analysis tool.
BMC Bioinform., 2015

Integrative analysis of LC-MS based glycomic and proteomic data.
Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2015

Integrating prior biological knowledge and graphical LASSO for network inference.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Purification of LC/GC-MS based biomolecular expression profiles using a topic model.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014
A new approach for multi-omic data integration.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013
Profile-Based LC-MS Data Alignment-A Bayesian Approach.
IEEE ACM Trans. Comput. Biol. Bioinform., 2013

Module-based breast cancer classification.
Int. J. Data Min. Bioinform., 2013

Multi-profile Bayesian alignment model for LC-MS data analysis with integration of internal standards.
Bioinform., 2013

Reconstructing biological networks using low order partial correlation.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

GPA: An algorithm for LC/MS based glycan profile annotation.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012
Identification of aberrant pathways and network activities from high-throughput data.
Briefings Bioinform., 2012

Variability assessment of LC-MS experiments and its application to experimental design and difference detection.
Proceedings of the Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, 2012

Integration of multiple data sources for identifying functional modules using Bayesian network.
Proceedings of the Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, 2012

Normalization of LC-MS data using Gaussian process.
Proceedings of the Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, 2012

Evaluation of normalization methods for analysis of LC-MS data.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

2011
Probabilistic Mixture Regression Models for Alignment of LC-MS Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2011

Workshop Introduction.
Proceedings of the Biocomputing 2011: Proceedings of the Pacific Symposium, 2011

A Computational Pipeline for LC-MS/MS Based Metabolite Identification.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

Analysis of aberrant pathways using HCC candidate biomarkers identified from high-throuput omics studies.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

Meta-analysis of LC-MS based metabolomic experiments.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

Bayesian Alignment Model for LC-MS Data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

Quality assessment of LC-MS metabolomic data.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

2010
Module-based biomarker discovery in breast cancer.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

Using a spike-in experiment to evaluate analysis of LC-MS data.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

A new method for alignment of LC-MALDI-TOF data.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

Metabolomic profiling for biomarker discovery in pancreatic cancer.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

2009
Analysis of LC-MS Data Using probabilitic-based mixture regression models (Analyse von LC-MS-Daten mit wahrscheinlichkeitsbasierter Mischung von Regressionsmodellen).
Autom., 2009

Session Introduction.
Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

2008
Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.
BMC Bioinform., 2008

Analysis of MALDI-TOF Spectrometry Data for Detection of Glycan Biomarkers.
Proceedings of the Biocomputing 2008, 2008

Reverse Engineering Module Networks by PSO-RNN Hybrid Modeling.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

Probabilistic-Based Mixture Regression Models for Multi-Class Alignment of LC-MS Data.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

2007
Neural network-based light attenuation model for monitoring seagrass population in the Indian river lagoon.
J. Intell. Inf. Syst., 2007

Peak selection from MALDI-TOF mass spectra using ant colony optimization.
Bioinform., 2007

2006
Estimation of Ocean Water Chlorophyll-a Concentration Using Fuzzy C-means Clustering and Artificial Neural Networks.
Proceedings of the International Joint Conference on Neural Networks, 2006

Inferring Network Interactions Using Recurrent Neural Networks and Swarm Intelligence.
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006

Ant Colony Optimization for Biomarker Identification from MALDI-TOF Mass Spectra.
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006

Inference of Gene Regulatory Networks from Time Course Gene Expression Data Using Neural Networks and Swarm Intelligence.
Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006

Biomarker Identification and Rule Extraction from Mass Spectral Serum Profiles.
Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006

2005
Applications of fuzzy logic in genomics.
Fuzzy Sets Syst., 2005

Analysis of mass spectral serum profiles for biomarker selection.
Bioinform., 2005

Particle swarm optimization for analysis of mass spectral serum profiles.
Proceedings of the Genetic and Evolutionary Computation Conference, 2005

Analysis of MALDI-TOF Serum Profiles for Biomarker Selection and Sample Classification.
Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005

2004
Inversion of ocean color observations using particle swarm optimization.
IEEE Trans. Geosci. Remote. Sens., 2004

Neural network-based retrieval of phytoplankton abundance from remotely-sensed ocean radiance.
Proceedings of the IASTED International Conference on Neural Networks and Computational Intelligence, 2004

Estimation of photosynthetic efficiency for monitoring seagrass health using neural networks.
Proceedings of the IASTED International Conference on Neural Networks and Computational Intelligence, 2004

A fuzzy confidence value for DNA bases.
Proceedings of the IEEE International Conference on Fuzzy Systems, 2004

Ocean color inversion by particle swarm optimization.
Proceedings of the IEEE Congress on Evolutionary Computation, 2004

2003
Adaptive double self-organizing maps for clustering gene expression profiles.
Neural Networks, 2003

Computational Methods for Identifying Number of Clusters in Gene Expression Data.
Proceedings of the IASTED International Conference on Neural Networks and Computational Intelligence, 2003

Fuzzy logic-based gene regulatory network.
Proceedings of the 12th IEEE International Conference on Fuzzy Systems, 2003

2002
Learning Premises of Fuzzy Rules for Knowledge Acquisition in Classification Problems.
Knowl. Inf. Syst., 2002

Double self-organizing maps to cluster gene expression data.
Proceedings of the 10th Eurorean Symposium on Artificial Neural Networks, 2002

Improving robustness of fuzzy gene modeling.
Proceedings of the 10th Eurorean Symposium on Artificial Neural Networks, 2002

Biodiversity and Ecosystems Informatics Workshop for the Indian River Lagoon.
Proceedings of the 2002 Annual National Conference on Digital Government Research, 2002

2000
On-line estimation of key quality parameters in nonwoven production.
Proceedings of the IEEE International Conference on Systems, 2000

1999
Dynamic system and virtual sensor modeling using neural networks = Modellierung dynamischer Systeme und virtueller Sensoren mit neuronalen Netzen.
PhD thesis, 1999

Modeling a compression plant using recurrent neural networks.
Proceedings of the International Joint Conference Neural Networks, 1999

Modeling a Refrigeration System Using Recurrent Neural Networks.
Proceedings of the Computational Intelligence, 1999

1997
Neurocontrol of Nonlinear Dynamic Systems Subject to Unmeasured Disturbance Inputs.
Proceedings of the Artificial Neural Networks, 1997


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