Ridvan Eksi

According to our database, Ridvan Eksi authored at least 7 papers between 2013 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

PRiMeFlow: Capturing Complex Expression Heterogeneity in Perturbation Response Modelling.

Zichao Yan, Yan Wu, Mica Xu Ji, Chaitra Agrahar, Esther Wershof, Marcel Nassar, Mehrshad Sadria, Ridvan Eksi, Vladimir Trifonov, Ignacio Ibarra, Telmo Felgueira, Blazej Osinski, Rory Stark

CoRR, April, 2026

2025

PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis.

Yan Wu, Esther Wershof, Sebastian M. Schmon, Marcel Nassar, Blazej Osinski, Ridvan Eksi, Zichao Yan, Rory Stark, Kun Zhang, Thore Graepel

Proceedings of the Advances in Neural Information Processing Systems 38: Annual Conference on Neural Information Processing Systems 2025, 2025

scGeneScope: A Treatment-Matched Single Cell Imaging and Transcriptomics Dataset and Benchmark for Treatment Response Modeling.

Joel Dapello, Marcel Nassar, Ridvan Eksi, Ban Wang, Jules Gagnon-Marchand, Kenneth T. Gao, Akram Baharlouei, Kyra Thrush, Nina Riehs, Amy Peterson, Aniket A. Tolpadi, Abhejit Rajagopal, Henry Miller, Ashley Conard, David Alvarez-Melis, Rory Stark, Simone Bianco, Morgan Levine, Ava Amini, Alex X. Lu, Nicolò Fusi, Ravi Pandya, Valentina Pedoia, Hana El-Samad

Proceedings of the Advances in Neural Information Processing Systems 38: Annual Conference on Neural Information Processing Systems 2025, 2025

2024

PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis.

Yan Wu, Esther Wershof, Sebastian M. Schmon, Marcel Nassar, Blazej Osinski, Ridvan Eksi, Kun Zhang, Thore Graepel

CoRR, 2024

2022

Micro-dissection and integration of long and short reads to create a robust catalog of kidney compartment-specific isoforms.

Hongyang Li, Ridvan Eksi, Daiyao Yi, Bradley Godfrey, Lisa R. Mathew, Christopher L. O'Connor, Markus Bitzer, Matthias Kretzler, Rajasree Menon, Yuanfang Guan

PLoS Comput. Biol., 2022

2014

Modeling dynamic functional relationship networks and application to <i>ex vivo</i> human erythroid differentiation.

Fan Zhu, Lihong Shi, Hongdong Li, Ridvan Eksi, James Douglas Engel, Yuanfang Guan

Bioinform., 2014

2013

Systematically Differentiating Functions for Alternatively Spliced Isoforms through Integrating RNA-seq Data.

Ridvan Eksi, Hongdong Li, Rajasree Menon, Yuchen Wen, Gilbert S. Omenn, Matthias Kretzler, Yuanfang Guan

PLoS Comput. Biol., 2013