Yuanfang Guan

Orcid: 0000-0001-8275-2852

According to our database1, Yuanfang Guan authored at least 44 papers between 2008 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2023
Computational approaches for detecting disease-associated alternative splicing events.
Briefings Bioinform., May, 2023

A Machine Learning Approach to Real-World Time to Treatment Discontinuation Prediction.
Adv. Intell. Syst., April, 2023

The CausalBench challenge: A machine learning contest for gene network inference from single-cell perturbation data.
CoRR, 2023

2022
An Ensemble of U-Net Models for Kidney Tumor Segmentation With CT Images.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Spatial Pyramid Pooling With 3D Convolution Improves Lung Cancer Detection.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Micro-dissection and integration of long and short reads to create a robust catalog of kidney compartment-specific isoforms.
PLoS Comput. Biol., 2022

Auto-annotating sleep stages based on polysomnographic data.
Patterns, 2022

Asymmetric predictive relationships across histone modifications.
Nat. Mach. Intell., 2022

TissueNexus: a database of human tissue functional gene networks built with a large compendium of curated RNA-seq data.
Nucleic Acids Res., 2022

An integrated brain-specific network identifies genes associated with neuropathologic and clinical traits of Alzheimer's disease.
Briefings Bioinform., 2022

Representation of molecules for drug response prediction.
Briefings Bioinform., 2022

Multilevel Modeling of Joint Damage in Rheumatoid Arthritis.
Adv. Intell. Syst., 2022

2021
Crowdsourcing digital health measures to predict Parkinson's disease severity: the Parkinson's Disease Digital Biomarker DREAM Challenge.
npj Digit. Medicine, 2021

A survival model generalized to regression learning algorithms.
Nat. Comput. Sci., 2021

Deep learning prediction of patient response time course from early data via neural-pharmacokinetic/pharmacodynamic modelling.
Nat. Mach. Intell., 2021

Identify differentially expressed genes with large background samples.
Int. J. Comput. Biol. Drug Des., 2021

Comparative analysis of molecular fingerprints in prediction of drug combination effects.
Briefings Bioinform., 2021


2020
Deep Learning Identifies Digital Biomarkers for Self-Reported Parkinson's Disease.
Patterns, 2020

Detecting Asymmetric Patterns and Localizing Cancers on Mammograms.
Patterns, 2020

Deep learning prediction of patient response time course from early data via neural-pharmacokinetic/pharmacodynamic modeling.
CoRR, 2020

Machine learning empowers phosphoproteome prediction in cancers.
Bioinform., 2020

2019
Model-Based and Model-Free Techniques for Amyotrophic Lateral Sclerosis Diagnostic Prediction and Patient Clustering.
Neuroinformatics, 2019

Waking up to data challenges.
Nat. Mach. Intell., 2019

Lung cancer screening with low-dose CT scans using a deep learning approach.
CoRR, 2019

TAIJI: approaching experimental replicates-level accuracy for drug synergy prediction.
Bioinform., 2019

BaiHui: cross-species brain-specific network built with hundreds of hand-curated datasets.
Bioinform., 2019

2018
YAMDA: thousandfold speedup of EM-based motif discovery using deep learning libraries and GPU.
Bioinform., 2018

Prioritizing predictive biomarkers for gene essentiality in cancer cells with mRNA expression data and DNA copy number profile.
Bioinform., 2018

2017
Complete hazard ranking to analyze right-censored data: An ALS survival study.
PLoS Comput. Biol., 2017

miRmine: a database of human miRNA expression profiles.
Bioinform., 2017

2016
Algorithms for modeling global and context-specific functional relationship networks.
Briefings Bioinform., 2016

A proteogenomic approach to understand splice isoform functions through sequence and expression-based computational modeling.
Briefings Bioinform., 2016

2015
Regulatory network inferred using expression data of small sample size: application and validation in erythroid system.
Bioinform., 2015

MIsoMine: a genome-scale high-resolution data portal of expression, function and networks at the splice isoform level in the mouse.
Database J. Biol. Databases Curation, 2015

2014
Modeling dynamic functional relationship networks and application to <i>ex vivo</i> human erythroid differentiation.
Bioinform., 2014

Predicting dynamic signaling network response under unseen perturbations.
Bioinform., 2014

2013
Functional Knowledge Transfer for High-accuracy Prediction of Under-studied Biological Processes.
PLoS Comput. Biol., 2013

Systematically Differentiating Functions for Alternatively Spliced Isoforms through Integrating RNA-seq Data.
PLoS Comput. Biol., 2013

2012
Tissue-Specific Functional Networks for Prioritizing Phenotype and Disease Genes.
PLoS Comput. Biol., 2012

IMP: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks.
Nucleic Acids Res., 2012

2010
Systematic Planning of Genome-Scale Experiments in Poorly Studied Species.
PLoS Comput. Biol., 2010

Functional Genomics Complements Quantitative Genetics in Identifying Disease-Gene Associations.
PLoS Comput. Biol., 2010

2008
A Genomewide Functional Network for the Laboratory Mouse.
PLoS Comput. Biol., 2008


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