Rodrigo Ochoa

According to our database, Rodrigo Ochoa authored at least 9 papers between 2014 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

pyPept: a python library to generate atomistic 2D and 3D representations of peptides.

Rodrigo Ochoa, J. B. Brown, Thomas Fox

J. Cheminformatics, December, 2023

2022

BILN: A Human-Readable Line Notation for Complex Peptides.

Thomas Fox, Michael Bieler, Peter Haebel, Rodrigo Ochoa, Stefan Peters, Alexander Weber

J. Chem. Inf. Model., 2022

Protocol for iterative optimization of modified peptides bound to protein targets.

Rodrigo Ochoa, Pilar Cossio, Thomas Fox

J. Comput. Aided Mol. Des., 2022

2021

PARCE: Protocol for Amino acid Refinement through Computational Evolution.

Rodrigo Ochoa, Miguel A. Soler, Alessandro Laio, Pilar Cossio

Comput. Phys. Commun., 2021

2020

An automated protocol for modelling peptide substrates to proteases.

Rodrigo Ochoa, Mikhail D. Magnitov, Roman A. Laskowski, Pilar Cossio, Janet M. Thornton

BMC Bioinform., 2020

2019

Predicting the Affinity of Peptides to Major Histocompatibility Complex Class II by Scoring Molecular Dynamics Simulations.

Rodrigo Ochoa, Alessandro Laio, Pilar Cossio

J. Chem. Inf. Model., 2019

Repurposing of known drugs for leishmaniasis treatment using bioinformatic predictions, in vitro validations and pharmacokinetic simulations.

Christian Bustamante, Rodrigo Ochoa, Claudia Asela, Carlos Muskus

J. Comput. Aided Mol. Des., 2019

2016

Drug search for leishmaniasis: a virtual screening approach by grid computing.

Rodrigo Ochoa, Stanley J. Watowich, Andrés F. Flórez, Carol V. Mesa, Sara M. Robledo, Carlos Muskus

J. Comput. Aided Mol. Des., 2016

2014

myChEMBL: a virtual machine implementation of open data and cheminformatics tools.

Rodrigo Ochoa, Mark Davies, George Papadatos, Francis Atkinson, John P. Overington

Bioinform., 2014