Roman A. Laskowski

According to our database, Roman A. Laskowski authored at least 27 papers between 1998 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2020

MGOS: A library for molecular geometry and its operating system.

Deok-Soo Kim, Joonghyun Ryu, Youngsong Cho, Mokwon Lee, Jehyun Cha, Chanyoung Song, Sangwha Kim, Roman A. Laskowski, Kokichi Sugihara, Jong Bhak, Seong Eon Ryu

Comput. Phys. Commun., 2020

An automated protocol for modelling peptide substrates to proteases.

Rodrigo Ochoa, Mikhail D. Magnitov, Roman A. Laskowski, Pilar Cossio, Janet M. Thornton

BMC Bioinform., 2020

2019

VarMap: a web tool for mapping genomic coordinates to protein sequence and structure and retrieving protein structural annotations.

James D. Stephenson, Roman A. Laskowski, Andrew Nightingale, Matthew E. Hurles, Janet M. Thornton

Bioinform., 2019

2016

BetaSCPWeb: side-chain prediction for protein structures using Voronoi diagrams and geometry prioritization.

Joonghyun Ryu, Mokwon Lee, Jehyun Cha, Roman A. Laskowski, Seong Eon Ryu, Deok-Soo Kim

Nucleic Acids Res., 2016

2015

CATH: comprehensive structural and functional annotations for genome sequences.

Ian Sillitoe, Tony E. Lewis, Alison L. Cuff, Sayoni Das, Paul Ashford, Natalie L. Dawson, Nicholas Furnham, Roman A. Laskowski, David A. Lee, Jonathan G. Lees, Sonja Lehtinen, Romain A. Studer, Janet M. Thornton, Christine A. Orengo

Nucleic Acids Res., 2015

BetaCavityWeb: a webserver for molecular voids and channels.

Jae-Kwan Kim, Youngsong Cho, Mokwon Lee, Roman A. Laskowski, Seong Eon Ryu, Kokichi Sugihara, Deok-Soo Kim

Nucleic Acids Res., 2015

2014

PDBsum additions.

Tjaart A. P. de Beer, Karel Berka, Janet M. Thornton, Roman A. Laskowski

Nucleic Acids Res., 2014

Anatomy of enzyme channels.

Lukás Pravda, Karel Berka, Radka Svobodová Vareková, David Sehnal, Pavel Banás, Roman A. Laskowski, Jaroslav Koca, Michal Otyepka

BMC Bioinform., 2014

2013

Amino Acid Changes in Disease-Associated Variants Differ Radically from Variants Observed in the 1000 Genomes Project Dataset.

Tjaart A. P. de Beer, Roman A. Laskowski, Sarah L. Parks, Botond Sipos, Nick Goldman, Janet M. Thornton

PLoS Comput. Biol., 2013

2012

Exploring the Evolution of Novel Enzyme Functions within Structurally Defined Protein Superfamilies.

Nicholas Furnham, Ian Sillitoe, Gemma L. Holliday, Alison L. Cuff, Roman A. Laskowski, Christine A. Orengo, Janet M. Thornton

PLoS Comput. Biol., 2012

FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies.

Nicholas Furnham, Ian Sillitoe, Gemma L. Holliday, Alison L. Cuff, Syed Asad Rahman, Roman A. Laskowski, Christine A. Orengo, Janet M. Thornton

Nucleic Acids Res., 2012

2011

LigPlot+: Multiple Ligand-Protein Interaction Diagrams for Drug Discovery.

Roman A. Laskowski, Mark B. Swindells

J. Chem. Inf. Model., 2011

2010

ArchSchema: a tool for interactive graphing of related Pfam domain architectures.

Asif U. Tamuri, Roman A. Laskowski

Bioinform., 2010

2009

Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure.

John A. Capra, Roman A. Laskowski, Janet M. Thornton, Mona Singh, Thomas A. Funkhouser

PLoS Comput. Biol., 2009

PDBsum new things.

Roman A. Laskowski

Nucleic Acids Res., 2009

WSsas: a web service for the annotation of functional residues through structural homologues.

David Talavera, Roman A. Laskowski, Janet M. Thornton

Bioinform., 2009

2007

Variation of geometrical and physicochemical properties in protein binding pockets and their ligands.

Abdullah Kahraman, Richard J. Morris, Roman A. Laskowski, Janet M. Thornton

BMC Bioinform., 2007

Enhancing the functional annotation of PDB structures in PDBsum using key figures extracted from the literature.

Roman A. Laskowski

Bioinform., 2007

2005

ProFunc: a server for predicting protein function from 3D structure.

Roman A. Laskowski, James D. Watson, Janet M. Thornton

Nucleic Acids Res., 2005

PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids.

Roman A. Laskowski, Victor V. Chistyakov, Janet M. Thornton

Nucleic Acids Res., 2005

2002

Detecting cryptically simple protein sequences using the SIMPLE algorithm.

M. Mar Albà, Roman A. Laskowski, John M. Hancock

Bioinform., 2002

2001

Amino acid?base interactions: a three-dimensional analysis of protein?DNA interactions at an atomic level.

Nicholas M. Luscombe, Roman A. Laskowski, Janet M. Thornton

Nucleic Acids Res., 2001

PDBsum: summaries and analyses of PDB structures.

Roman A. Laskowski

Nucleic Acids Res., 2001

1999

BLEEP - potential of mean force describing protein-ligand interactions: I. Generating potential.

John B. O. Mitchell, Roman A. Laskowski, Alexander Alex, Janet M. Thornton

J. Comput. Chem., 1999

BLEEP - potential of mean force describing protein-ligand interactions: II. Calculation of binding energies and comparison with experimental data.

John B. O. Mitchell, Roman A. Laskowski, Alexander Alex, Mark J. Forster, Janet M. Thornton

J. Comput. Chem., 1999

1998

Dihydrofolate reductase: A potential drug target in trypanosomes and leishmania.

Fabio Zuccotto, Andrew C. R. Martin, Roman A. Laskowski, Janet M. Thornton, Ian H. Gilbert

J. Comput. Aided Mol. Des., 1998

[Invited Lecture] Protein Folds and Functions.

Janet M. Thornton, Andrew C. R. Martin, Christine A. Orengo, Duncan Milburn, Roman A. Laskowski

Proceedings of the German Conference on Bioinformatics, 1998