Jakob Hull Havgaard

According to our database, Jakob Hull Havgaard authored at least 11 papers between 2005 and 2020.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2020

Using GPU to accelerate the pairwise structural RNA alignment with base pair probabilities.

Daniel Sundfeld, George Teodoro, Jakob Hull Havgaard, Jan Gorodkin, Alba C. M. A. Melo

Concurr. Comput. Pract. Exp., 2020

2017

RNAscClust: clustering RNA sequences using structure conservation and graph based motifs.

Milad Miladi, Alexander Junge, Fabrizio Costa, Stefan E. Seemann, Jakob Hull Havgaard, Jan Gorodkin, Rolf Backofen

Bioinform., 2017

CUDA-Sankoff: Using GPU to Accelerate the Pairwise Structural RNA Alignment.

Daniel Sundfeld, Jakob Hull Havgaard, Jan Gorodkin, Alba Cristina Magalhaes Alves de Melo

Proceedings of the 25th Euromicro International Conference on Parallel, 2017

2016

Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment.

Daniel Sundfeld, Jakob Hull Havgaard, Alba Cristina Magalhaes Alves de Melo, Jan Gorodkin

Bioinform., 2016

2009

Structural profiles of human miRNA families from pairwise clustering.

Bogumil Kaczkowski, Elfar Torarinsson, Kristin Reiche, Jakob Hull Havgaard, Peter F. Stadler, Jan Gorodkin

Bioinform., 2009

2007

Fast Pairwise Structural RNA Alignments by Pruning of the Dynamical Programming Matrix.

Jakob Hull Havgaard, Elfar Torarinsson, Jan Gorodkin

PLoS Comput. Biol., 2007

Multiple structural alignment and clustering of RNA sequences.

Elfar Torarinsson, Jakob Hull Havgaard, Jan Gorodkin

Bioinform., 2007

SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.

Frank Panitz, Henrik Stengaard, Henrik Hornshøj, Jan Gorodkin, Jakob Hedegaard, Susanna Cirera, Bo Thomsen, Lone B. Madsen, Anette Høj, Rikke K. Vingborg, Bujie Zahn, Xuegang Wang, Xuefei Wang, Rasmus Wernersson, Claus B. Jørgensen, Karsten Scheibye-Knudsen, Troels Arvin, Steen Lumholdt, Milena Sawera, Trine Green, Bente J. Nielsen, Jakob Hull Havgaard, Søren Brunak, Merete Fredholm, Christian Bendixen

Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

2006

MicroRNA sequence motifs reveal asymmetry between the stem arms.

Jan Gorodkin, Jakob Hull Havgaard, Milena Ensterö, Milena Sawera, Peter Jensen, M. Öhman, Merete Fredholm

Comput. Biol. Chem., 2006

2005

The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search.

Jakob Hull Havgaard, Rune B. Lyngsø, Jan Gorodkin

Nucleic Acids Res., 2005

Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%.

Jakob Hull Havgaard, Rune B. Lyngsø, Gary D. Stormo, Jan Gorodkin

Bioinform., 2005