Samik Ghosh

According to our database, Samik Ghosh authored at least 28 papers between 2004 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2019

Computational Systems Biology Applications.

Ayako Yachie-Kinoshita, Sucheendra K. Palaniappan, Samik Ghosh

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 3, 2019

Computational Systems Biology.

Sucheendra K. Palaniappan, Ayako Yachie-Kinoshita, Samik Ghosh

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

2017

Supporting evidence-based analysis for modified risk tobacco products through a toxicology data-sharing infrastructure.

Stéphanie Boué, Thomas E. Exner, Samik Ghosh, Vincenzo Belcastro, Joh Dokler, David Page, Akash R. Boda, Filipe Bonjour, Barry J. Hardy, Patrick Vanscheeuwijck, Julia Hoeng, Manuel C. Peitsch

F1000Research, 2017

2016

Measuring the State of the Art of Automated Pathway Curation Using Graph Algorithms - A Case Study of the mTOR Pathway.

Michael Spranger, Sucheendra K. Palaniappan, Samik Ghosh

Proceedings of the 15th Workshop on Biomedical Natural Language Processing, 2016

2015

Extracting Biological Pathway Models From NLP Event Representations.

Michael Spranger, Sucheendra K. Palaniappan, Samik Ghosh

Proceedings of the Workshop on Biomedical Natural Language Processing, BioNLP@IJCNLP 2015, 2015

2014

Identification of drug-target modules in the human protein-protein interaction network.

Takeshi Hase, Kaito Kikuchi, Samik Ghosh, Hiroaki Kitano, Hiroshi Tanaka

Artif. Life Robotics, 2014

2013

Harnessing Diversity towards the Reconstructing of Large Scale Gene Regulatory Networks.

Takeshi Hase, Samik Ghosh, Ryota Yamanaka, Hiroaki Kitano

PLoS Comput. Biol., 2013

A comprehensive map of the influenza A virus replication cycle.

Yukiko Matsuoka, Hiromi Matsumae, Manami Katoh, Amie J. Eisfeld, Gabriele Neumann, Takeshi Hase, Samik Ghosh, Jason E. Shoemaker, Tiago J. S. Lopes, Tokiko Watanabe, Shinji Watanabe, Satoshi Fukuyama, Hiroaki Kitano, Yoshihiro Kawaoka

BMC Syst. Biol., 2013

A versatile platform for multilevel modeling of physiological systems: Template/instance framework for large-scale modeling and simulation.

Yoshiyuki Asai, Takeshi Abe, Hideki Oka, Masao Okita, Tomohiro Okuyama, Kenichi Hagihara, Samik Ghosh, Yukiko Matsuoka, Yoshihisa Kurachi, Hiroaki Kitano

Proceedings of the 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2013

2012

AlzPathway: a comprehensive map of signaling pathways of Alzheimer's disease.

Satoshi Mizuno, Risa Iijima, Soichi Ogishima, Masataka Kikuchi, Yukiko Matsuoka, Samik Ghosh, Tadashi Miyamoto, Akinori Miyashita, Ryozo Kuwano, Hiroshi Tanaka

BMC Syst. Biol., 2012

2010

Payao: a community platform for SBML pathway model curation.

Yukiko Matsuoka, Samik Ghosh, Norihiro Kikuchi, Hiroaki Kitano

Bioinform., 2010

2009

Parametric modeling of protein-DNA binding kinetics: A discrete event based simulation approach.

Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das

Discret. Appl. Math., 2009

2008

Holding time estimation for reactions in stochastic event-based simulation of complex biological systems.

Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das

Simul. Model. Pract. Theory, 2008

2007

A Computationally Fast and Parametric Model to Estimate Protein-Ligand Docking Time for Stochastic Event Based Simulation.

Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das

Trans. Comp. Sys. Biology, 2007

Channel Assignment Strategies for Multiradio Wireless Mesh Networks: Issues and Solutions.

Habiba Skalli, Samik Ghosh, Sajal K. Das, Luciano Lenzini

IEEE Commun. Mag., 2007

"MeshUp": Self-organizing mesh-based topologies for next generation radio access networks.

Samik Ghosh, Kalyan Basu, Sajal K. Das

Ad Hoc Networks, 2007

Revisiting the Optimal Partitioning of Zones in Next Generation Cellular Networks: A Network Capacity Impact Perspective.

Samik Ghosh, Huan Li, Hee Lee, Prabir Das, Kalyan Basu, Sajal K. Das

Proceedings of the Managing Traffic Performance in Converged Networks, 2007

Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes.

Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das

Proceedings of the 2007 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2007

Modeling the Stochastic Dynamics of Gene Expression in Single Cells: A Birth and Death Markov Chain Analysis.

Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. Das

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007

2006

Stochastic Modeling of Cytoplasmic Reactions in Complex Biological Systems.

Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das, Simon Daefler

Proceedings of the Computational Science and Its Applications, 2006

An analytical model to estimate the time taken for cytoplasmic reactions for stochastic simulation of complex biological systems.

Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das, Simon Daefler

Proceedings of the 2006 IEEE International Conference on Granular Computing, 2006

A Stochastic model to estimate the time taken for Protein-Ligand Docking.

Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das, Simon Daefler

Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006

iSimBioSys: A Discrete Event Simulation Platform for 'in silico' study of biological systems.

Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. Das, Simon Daefler

Proceedings of the Proceedings 39th Annual Simulation Symposium (ANSS-39 2006), 2006

2005

GaMa : An Evolutionary Algorithmic Approach for the Design of Mesh-Based Radio Access Networks.

Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. Das

Proceedings of the 30th Annual IEEE Conference on Local Computer Networks (LCN 2005), 2005

FraNtiC: A Fractal Geometric Framework for Mesh-Based Wireless Access Networks.

Samik Ghosh, Kalyan Basu, Sajal K. Das

Proceedings of the 25th International Conference on Distributed Computing Systems (ICDCS 2005), 2005

iSimBioSys: An "In Silico" Discrete Event Simulation Framework for Modeling Biological Systems.

Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. Das

Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005

A Diffusion Model to Estimate the Inter-arrival Time of Charged Molecules in Stochastic Event based Modeling of Complex Biological Networks.

Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das

Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005

2004

PeterNet: An Emergent Technology Based Radio Access Network Architecture for Next Generation Cellular Wireless Systems.

Samik Ghosh, Pradip De, Kalyan Basu, Sajal K. Das

Proceedings of the 1st International Conference on Broadband Networks (BROADNETS 2004), 2004