Yukiko Matsuoka

According to our database, Yukiko Matsuoka authored at least 16 papers between 2004 and 2016.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2016

systemsDock: a web server for network pharmacology-based prediction and analysis.

Kun-Yi Hsin, Yukiko Matsuoka, Yoshiyuki Asai, Kyota Kamiyoshi, Tokiko Watanabe, Yoshihiro Kawaoka, Hiroaki Kitano

Nucleic Acids Res., 2016

2013

Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions.

Martin H. Schaefer, Tiago J. S. Lopes, Nancy Mah, Jason E. Shoemaker, Yukiko Matsuoka, Jean-Fred Fontaine, Caroline Louis-Jeune, Amie J. Eisfeld, Gabriele Neumann, Carol Perez-Iratxeta, Yoshihiro Kawaoka, Hiroaki Kitano, Miguel A. Andrade-Navarro

PLoS Comput. Biol., 2013

A comprehensive map of the influenza A virus replication cycle.

Yukiko Matsuoka, Hiromi Matsumae, Manami Katoh, Amie J. Eisfeld, Gabriele Neumann, Takeshi Hase, Samik Ghosh, Jason E. Shoemaker, Tiago J. S. Lopes, Tokiko Watanabe, Shinji Watanabe, Satoshi Fukuyama, Hiroaki Kitano, Yoshihiro Kawaoka

BMC Syst. Biol., 2013

A versatile platform for multilevel modeling of physiological systems: Template/instance framework for large-scale modeling and simulation.

Yoshiyuki Asai, Takeshi Abe, Hideki Oka, Masao Okita, Tomohiro Okuyama, Kenichi Hagihara, Samik Ghosh, Yukiko Matsuoka, Yoshihisa Kurachi, Hiroaki Kitano

Proceedings of the 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2013

2012

Integrated network analysis reveals a novel role for the cell cycle in 2009 pandemic influenza virus-induced inflammation in macaque lungs.

Jason E. Shoemaker, Satoshi Fukuyama, Amie J. Eisfeld, Yukiko Muramoto, Shinji Watanabe, Tokiko Watanabe, Yukiko Matsuoka, Hiroaki Kitano, Yoshihiro Kawaoka

BMC Syst. Biol., 2012

AlzPathway: a comprehensive map of signaling pathways of Alzheimer's disease.

Satoshi Mizuno, Risa Iijima, Soichi Ogishima, Masataka Kikuchi, Yukiko Matsuoka, Samik Ghosh, Tadashi Miyamoto, Akinori Miyashita, Ryozo Kuwano, Hiroshi Tanaka

BMC Syst. Biol., 2012

Software support for SBGN maps: SBGN-ML and LibSBGN.

Martijn P. van Iersel, Alice Villéger, Tobias Czauderna, Sarah E. Boyd, Frank T. Bergmann, Augustin Luna, Emek Demir, Anatoly A. Sorokin, Ugur Dogrusöz, Yukiko Matsuoka, Akira Funahashi, Mirit I. Aladjem, Huaiyu Mi, Stuart L. Moodie, Hiroaki Kitano, Nicolas Le Novère, Falk Schreiber

Bioinform., 2012

2011

BioPAX support in CellDesigner.

Huaiyu Mi, Anushya Muruganujan, Emek Demir, Yukiko Matsuoka, Akira Funahashi, Hiroaki Kitano, Paul D. Thomas

Bioinform., 2011

Tissue-specific subnetworks and characteristics of publicly available human protein interaction databases.

Tiago J. S. Lopes, Martin H. Schaefer, Jason E. Shoemaker, Yukiko Matsuoka, Jean-Fred Fontaine, Gabriele Neumann, Miguel A. Andrade-Navarro, Yoshihiro Kawaoka, Hiroaki Kitano

Bioinform., 2011

2010

Payao: a community platform for SBML pathway model curation.

Yukiko Matsuoka, Samik Ghosh, Norihiro Kikuchi, Hiroaki Kitano

Bioinform., 2010

PathText: a text mining integrator for biological pathway visualizations.

Brian Kemper, Takuya Matsuzaki, Yukiko Matsuoka, Yoshimasa Tsuruoka, Hiroaki Kitano, Sophia Ananiadou, Jun'ichi Tsujii

Bioinform., 2010

2008

CellDesigner 3.5: A Versatile Modeling Tool for Biochemical Networks.

Akira Funahashi, Yukiko Matsuoka, Akiya Jouraku, Mineo Morohashi, Norihiro Kikuchi, Hiroaki Kitano

Proc. IEEE, 2008

Connecting Text Mining and Pathways using the PathText Resource.

Rune Sætre, Brian Kemper, Kanae Oda, Naoaki Okazaki, Yukiko Matsuoka, Norihiro Kikuchi, Hiroaki Kitano, Yoshimasa Tsuruoka, Sophia Ananiadou, Jun'ichi Tsujii

Proceedings of the International Conference on Language Resources and Evaluation, 2008

2007

Integration of CellDesigner and SABIO-RK.

Akira Funahashi, Akiya Jouraku, Yukiko Matsuoka, Hiroaki Kitano

Silico Biol., 2007

2006

CellDesigner: a modeling tool for biochemical networks.

Akira Funahashi, Yukiko Matsuoka, Akiya Jouraku, Hiroaki Kitano, Norihiro Kikuchi

Proceedings of the Winter Simulation Conference WSC 2006, 2006

2004

The Story of Pino.

Hiroaki Kitano, Fuminori Yamasaki, Tatsuya Matsui, Ken Endo, Yukiko Matsuoka, Hiroshi Kaminaga, Yuichiro Kato

Int. J. Humanoid Robotics, 2004