Samuel Sledzieski

According to our database, Samuel Sledzieski authored at least 10 papers between 2021 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2026

MIMIC: A Generative Multimodal Foundation Model for Biomolecules.

Siavash Golkar, Jake Kovalic, Irina Espejo Morales, Samuel Sledzieski, Minhuan Li, Ksenia Sokolova, Géraud Krawezik, Alberto Bietti, Claudia Skok Gibbs, Roman Klypa, Shengwei Xiong, François Lanusse, Liam Holden Parker, Kyunghyun Cho, Miles D. Cranmer, Tom Hehir, Michael McCabe, Lucas Meyer, Rudy Morel, Payel Mukhopadhyay, Mariel Pettee, Helen Qu, Jeff Shen, David Fouhey, Hadi Sotoudeh, Vikram Khipple Mulligan, Pilar Cossio, Sonya M. Hanson, Alisha N. Jones, Olga G. Troyanskaya, Shirley Ho

CoRR, April, 2026

Reverse Distillation: Consistently Scaling Protein Language Model Representations.

Darius Catrina, Christian Bepler, Samuel Sledzieski, Rohit Singh

CoRR, March, 2026

2025

Memory-efficient, accelerated protein interaction inference with blocked, multi-GPU D-SCRIPT.

Daniel E. Schäffer, Samuel Sledzieski, Lenore Cowen, Bonnie Berger

Bioinform., 2025

Decoding the Functional Interactome of Non-model Organisms with PHILHARMONIC.

Samuel Sledzieski, Charlotte Versavel, Rohit Singh, Faith Ocitti, Kapil Devkota, Lokender Kumar, Polina Shpilker, Liza Roger, Jinkyu Yang, Nastassja Lewinski, Hollie Putnam, Bonnie Berger, Judith Klein-Seetharaman, Lenore Cowen

Proceedings of the Research in Computational Molecular Biology, 2025

RDS: A ReCIPE for Overlapping Community Detection in Biological Networks.

Faith Abiria Ocitti, Charlotte Versavel, Samuel Sledzieski, Lenore Cowen

Proceedings of the 16th ACM International Conference on Bioinformatics, 2025

2023

TT3D: Leveraging precomputed protein 3D sequence models to predict protein-protein interactions.

Samuel Sledzieski, Kapil Devkota, Rohit Singh, Lenore Cowen, Bonnie Berger

Bioinform., October, 2023

virDTL: Viral Recombination Analysis Through Phylogenetic Reconciliation and Its Application to Sarbecoviruses and SARS-CoV-2.

Sumaira Zaman, Samuel Sledzieski, Bonnie Berger, Yi-Chieh Wu, Mukul S. Bansal

J. Comput. Biol., 2023

2022

Topsy-Turvy: integrating a global view into sequence-based PPI prediction.

Rohit Singh, Kapil Devkota, Samuel Sledzieski, Bonnie Berger, Lenore Cowen

Bioinform., 2022

2021

virDTL.

Sumaira Zaman, Samuel Sledzieski, Bonnie Berger, Yi-Chieh Wu, Mukul S. Bansal

Dataset, August, 2021

TreeFix-TP: Phylogenetic Error-Correction for Infectious Disease Transmission Network Inference.

Samuel Sledzieski, Chengchen Zhang, Ion I. Mandoiu, Mukul S. Bansal

Proceedings of the Biocomputing 2021: Proceedings of the Pacific Symposium, 2021